Hb_004218_120

Information

Type -
Description -
Location Contig4218: 138974-141320
Sequence    

Annotation

kegg
ID rcu:RCOM_1452850
description Ubiquitin ligase SINAT5, putative
nr
ID XP_012068636.1
description PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S3N1
description E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2
trembl
ID A0A067KWI1
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_24516 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41671: 137804-141374 , PASA_asmbl_41672: 140216-140753 , PASA_asmbl_41673: 138856-141374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_120 0.0 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
2 Hb_000203_270 0.1094505944 - - alpha-xylosidase, putative [Ricinus communis]
3 Hb_002325_060 0.1164148526 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
4 Hb_001135_030 0.1220611968 - - PREDICTED: interaptin-like [Jatropha curcas]
5 Hb_002849_070 0.1248959854 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
6 Hb_000200_170 0.1337592525 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
7 Hb_002876_210 0.1354928292 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
8 Hb_001500_030 0.1375166262 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
9 Hb_002450_030 0.1388493568 - - ATPP2-A13, putative [Ricinus communis]
10 Hb_002349_030 0.1389132952 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000056_080 0.13893197 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
12 Hb_003849_190 0.1393963552 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
13 Hb_000197_180 0.1393997677 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
14 Hb_017948_030 0.1395699712 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
15 Hb_002869_050 0.1396903527 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
16 Hb_003975_010 0.139759769 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
17 Hb_000523_030 0.1398209214 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
18 Hb_000711_010 0.1399718675 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_002217_500 0.1402838753 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
20 Hb_001691_040 0.1402992687 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_120 Hb_004218_120 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000203_270--Hb_000200_170 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_000035_050 Hb_000035_050 Hb_001135_030--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_001135_030--Hb_007253_010 Hb_013358_020 Hb_013358_020 Hb_001135_030--Hb_013358_020 Hb_159809_050 Hb_159809_050 Hb_001135_030--Hb_159809_050 Hb_002849_070--Hb_000200_170 Hb_000056_080 Hb_000056_080 Hb_002849_070--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_000200_170--Hb_001818_060 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_000711_010 Hb_000711_010 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63265 12.1372 8.76497 16.4319 2.02811 3.02701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94991 4.24317 1.4587 3.86337 5.99132

CAGE analysis