Hb_001135_030

Information

Type -
Description -
Location Contig1135: 39463-43670
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22140g
description POPTRDRAFT_567521; hypothetical protein
nr
ID XP_012073475.1
description PREDICTED: interaptin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04023: 39139-39385 , PASA_asmbl_04024: 37541-40339 , PASA_asmbl_04025: 40398-40769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_030 0.0 - - PREDICTED: interaptin-like [Jatropha curcas]
2 Hb_000203_270 0.1031077052 - - alpha-xylosidase, putative [Ricinus communis]
3 Hb_000035_050 0.1115934994 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
4 Hb_007253_010 0.1155847012 - - syntaxin, putative [Ricinus communis]
5 Hb_013358_020 0.1164695102 - - ccr4-associated factor, putative [Ricinus communis]
6 Hb_159809_050 0.1217435301 - - AT14A, putative [Ricinus communis]
7 Hb_004218_120 0.1220611968 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
8 Hb_028487_130 0.1221057859 - - kinase family protein [Populus trichocarpa]
9 Hb_017948_030 0.1221168141 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
10 Hb_000523_030 0.1257943405 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_056196_060 0.1269680375 - - hexokinase [Manihot esculenta]
12 Hb_000637_020 0.1288579559 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
13 Hb_000671_030 0.1314058434 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
14 Hb_000395_040 0.135009196 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
15 Hb_002615_070 0.1376360559 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
16 Hb_002869_050 0.1387156101 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
17 Hb_003964_080 0.1394102047 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
18 Hb_000749_070 0.1401093479 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
19 Hb_000753_160 0.1405336824 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
20 Hb_063716_090 0.1451502651 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001135_030 Hb_001135_030 Hb_000203_270 Hb_000203_270 Hb_001135_030--Hb_000203_270 Hb_000035_050 Hb_000035_050 Hb_001135_030--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_001135_030--Hb_007253_010 Hb_013358_020 Hb_013358_020 Hb_001135_030--Hb_013358_020 Hb_159809_050 Hb_159809_050 Hb_001135_030--Hb_159809_050 Hb_004218_120 Hb_004218_120 Hb_001135_030--Hb_004218_120 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002849_070 Hb_002849_070 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000200_170 Hb_000200_170 Hb_000203_270--Hb_000200_170 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_000035_050--Hb_013358_020 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_018790_050 Hb_018790_050 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_007253_010--Hb_159809_050 Hb_000749_070 Hb_000749_070 Hb_007253_010--Hb_000749_070 Hb_007253_010--Hb_013358_020 Hb_007253_010--Hb_004117_170 Hb_007253_010--Hb_000035_050 Hb_007253_010--Hb_018790_050 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_004117_170 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_159809_050--Hb_000749_070 Hb_159809_050--Hb_013358_020 Hb_003581_280 Hb_003581_280 Hb_159809_050--Hb_003581_280 Hb_159809_050--Hb_000035_050 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_004218_120--Hb_002849_070 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.550678 3.7942 3.66912 5.27193 1.06011 0.942958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18108 1.02938 0.842836 1.22796 0.854763

CAGE analysis