Hb_084849_010

Information

Type -
Description -
Location Contig84849: 22987-24052
Sequence    

Annotation

kegg
ID rcu:RCOM_0629740
description hypothetical protein
nr
ID XP_002527797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q56XJ7
description Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1
trembl
ID B9SP78
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60265: 23000-24344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084849_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013358_020 0.0980797606 - - ccr4-associated factor, putative [Ricinus communis]
3 Hb_000637_020 0.0986500207 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
4 Hb_000072_190 0.1127932432 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
5 Hb_000035_050 0.1225342948 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
6 Hb_002450_030 0.1320957817 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_000749_070 0.1372438513 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
8 Hb_004117_170 0.137690403 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
9 Hb_000191_050 0.1397240298 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
10 Hb_002875_070 0.1407128477 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
11 Hb_000020_100 0.1464389337 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
12 Hb_018790_050 0.1518547362 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
13 Hb_001135_030 0.1522536896 - - PREDICTED: interaptin-like [Jatropha curcas]
14 Hb_005714_100 0.1523243443 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_171900_020 0.1525484374 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
16 Hb_007253_010 0.152853652 - - syntaxin, putative [Ricinus communis]
17 Hb_003849_190 0.1595844346 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
18 Hb_002078_290 0.1626285407 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
19 Hb_000056_080 0.1644987019 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
20 Hb_004631_200 0.1651976196 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_084849_010 Hb_084849_010 Hb_013358_020 Hb_013358_020 Hb_084849_010--Hb_013358_020 Hb_000637_020 Hb_000637_020 Hb_084849_010--Hb_000637_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_000035_050 Hb_000035_050 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_013358_020--Hb_007253_010 Hb_004117_170 Hb_004117_170 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_000637_020--Hb_013358_020 Hb_000637_020--Hb_000035_050 Hb_002374_270 Hb_002374_270 Hb_000637_020--Hb_002374_270 Hb_000072_190--Hb_013358_020 Hb_031822_010 Hb_031822_010 Hb_000072_190--Hb_031822_010 Hb_000072_190--Hb_000749_070 Hb_006018_050 Hb_006018_050 Hb_000072_190--Hb_006018_050 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_000035_050--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_003849_190 Hb_003849_190 Hb_002450_030--Hb_003849_190 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_023344_110 Hb_023344_110 Hb_002450_030--Hb_023344_110 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0671 78.7538 60.3329 102.176 7.26207 7.52662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3 38.9183 19.0372 12.4399 12.97

CAGE analysis