Hb_002217_500

Information

Type -
Description -
Location Contig2217: 440069-443500
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10350g
description POPTRDRAFT_721056; DNA replication family protein
nr
ID KDP27934.1
description hypothetical protein JCGZ_19014 [Jatropha curcas]
swissprot
ID Q499W2
description DNA replication complex GINS protein SLD5 OS=Rattus norvegicus GN=Gins4 PE=2 SV=1
trembl
ID A0A067K7Y6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19014 PE=4 SV=1
Gene Ontology
ID GO:0000811
description dna replication complex gins protein sld5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22963: 440302-443499 , PASA_asmbl_22964: 441073-441181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_500 0.0 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
2 Hb_001474_020 0.1055966283 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
3 Hb_003975_010 0.1201365047 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
4 Hb_002046_060 0.1217942262 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
5 Hb_001691_040 0.1231289558 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
6 Hb_002450_030 0.1245331118 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_023344_110 0.1262815323 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
8 Hb_006469_070 0.1286288486 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
9 Hb_001754_020 0.1316703353 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
10 Hb_004109_050 0.1371789695 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
11 Hb_000912_100 0.1393351 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
12 Hb_000008_190 0.139957061 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_004218_120 0.1402838753 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
14 Hb_147245_010 0.1403757633 - - casein kinase, putative [Ricinus communis]
15 Hb_000177_110 0.1404601362 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
16 Hb_002235_060 0.1413246313 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
17 Hb_012760_050 0.1420725585 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
18 Hb_001347_050 0.1421626881 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_003209_130 0.1435294035 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_000671_130 0.1435997765 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_500 Hb_002217_500 Hb_001474_020 Hb_001474_020 Hb_002217_500--Hb_001474_020 Hb_003975_010 Hb_003975_010 Hb_002217_500--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002450_030 Hb_002450_030 Hb_002217_500--Hb_002450_030 Hb_023344_110 Hb_023344_110 Hb_002217_500--Hb_023344_110 Hb_011360_110 Hb_011360_110 Hb_001474_020--Hb_011360_110 Hb_132840_160 Hb_132840_160 Hb_001474_020--Hb_132840_160 Hb_001474_020--Hb_002046_060 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_001474_020--Hb_023344_110 Hb_003975_010--Hb_001691_040 Hb_005192_010 Hb_005192_010 Hb_003975_010--Hb_005192_010 Hb_001754_020 Hb_001754_020 Hb_003975_010--Hb_001754_020 Hb_000912_100 Hb_000912_100 Hb_003975_010--Hb_000912_100 Hb_003975_010--Hb_002046_060 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_002046_060--Hb_000912_100 Hb_002046_060--Hb_006469_070 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_002272_240 Hb_002272_240 Hb_001691_040--Hb_002272_240 Hb_001691_040--Hb_000912_100 Hb_001691_040--Hb_001754_020 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_002876_210 Hb_002876_210 Hb_001691_040--Hb_002876_210 Hb_003849_190 Hb_003849_190 Hb_002450_030--Hb_003849_190 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_023344_110--Hb_003849_190 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0123 9.27802 6.71091 23.5442 1.985 2.54284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65049 4.28717 4.59305 3.54353 7.84611

CAGE analysis