Hb_001474_020

Information

Type -
Description -
Location Contig1474: 32621-37808
Sequence    

Annotation

kegg
ID tcc:TCM_043168
description Zinc finger (C3HC4-type RING finger) family protein
nr
ID XP_012093273.1
description PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID A0A067LIF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger (c3hc4-type ring finger) family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12019: 32946-37826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001474_020 0.0 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
2 Hb_011360_110 0.0802443284 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
3 Hb_132840_160 0.0858429012 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002046_060 0.1017110118 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
5 Hb_002217_500 0.1055966283 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
6 Hb_006469_070 0.1321300461 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
7 Hb_023344_110 0.133218932 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
8 Hb_000062_660 0.1405810806 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
9 Hb_001699_170 0.1410947517 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004109_050 0.1411079413 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
11 Hb_000570_020 0.1416314713 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
12 Hb_147245_010 0.1418860482 - - casein kinase, putative [Ricinus communis]
13 Hb_003371_070 0.1434679409 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
14 Hb_028639_030 0.1442040118 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_012707_040 0.1446689073 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
16 Hb_000928_120 0.1448280781 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
17 Hb_000028_430 0.1468883788 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
18 Hb_005489_150 0.1470246094 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
19 Hb_004449_250 0.1477238322 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
20 Hb_007537_030 0.1490049855 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001474_020 Hb_001474_020 Hb_011360_110 Hb_011360_110 Hb_001474_020--Hb_011360_110 Hb_132840_160 Hb_132840_160 Hb_001474_020--Hb_132840_160 Hb_002046_060 Hb_002046_060 Hb_001474_020--Hb_002046_060 Hb_002217_500 Hb_002217_500 Hb_001474_020--Hb_002217_500 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_023344_110 Hb_023344_110 Hb_001474_020--Hb_023344_110 Hb_028639_030 Hb_028639_030 Hb_011360_110--Hb_028639_030 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_004449_250 Hb_004449_250 Hb_011360_110--Hb_004449_250 Hb_000320_350 Hb_000320_350 Hb_011360_110--Hb_000320_350 Hb_132840_160--Hb_002046_060 Hb_003371_070 Hb_003371_070 Hb_132840_160--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_132840_160--Hb_000057_130 Hb_000339_020 Hb_000339_020 Hb_132840_160--Hb_000339_020 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_002217_500--Hb_003975_010 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002450_030 Hb_002450_030 Hb_002217_500--Hb_002450_030 Hb_002217_500--Hb_023344_110 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_003849_190 Hb_003849_190 Hb_023344_110--Hb_003849_190 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.654567 4.1448 2.52799 9.71297 0.529973 0.473508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28931 1.49301 1.98016 2.27181 5.12649

CAGE analysis