Hb_000339_020

Information

Type -
Description -
Location Contig339: 21426-22880
Sequence    

Annotation

kegg
ID rcu:RCOM_1249850
description CBL-interacting serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012091790.1
description PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
swissprot
ID Q9SN43
description CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1
trembl
ID A0A067JNN0
description Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_21580 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cbl-interacting serine threonine-protein kinase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35422: 21203-22924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000339_020 0.0 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
2 Hb_000057_130 0.1128706069 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
3 Hb_000861_100 0.1328425117 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
4 Hb_003030_010 0.1345775732 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
5 Hb_132840_160 0.1396257878 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003371_070 0.1428927352 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
7 Hb_001754_050 0.1439747231 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_004129_010 0.1473310272 - - aspartate aminotransferase, putative [Ricinus communis]
9 Hb_000622_060 0.1482862331 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
10 Hb_007229_050 0.1532210814 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
11 Hb_002200_070 0.1576521981 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
12 Hb_027380_190 0.1580508449 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
13 Hb_002170_020 0.1588852756 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
14 Hb_143766_080 0.1602037883 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
15 Hb_007590_090 0.1632421338 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
16 Hb_010672_030 0.164829581 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
17 Hb_187959_010 0.1666177297 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
18 Hb_080477_080 0.1698465833 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
19 Hb_001817_100 0.1707261074 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
20 Hb_003710_020 0.1715489745 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000339_020 Hb_000339_020 Hb_000057_130 Hb_000057_130 Hb_000339_020--Hb_000057_130 Hb_000861_100 Hb_000861_100 Hb_000339_020--Hb_000861_100 Hb_003030_010 Hb_003030_010 Hb_000339_020--Hb_003030_010 Hb_132840_160 Hb_132840_160 Hb_000339_020--Hb_132840_160 Hb_003371_070 Hb_003371_070 Hb_000339_020--Hb_003371_070 Hb_001754_050 Hb_001754_050 Hb_000339_020--Hb_001754_050 Hb_000057_130--Hb_000861_100 Hb_000057_130--Hb_003371_070 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_007229_050 Hb_007229_050 Hb_000861_100--Hb_007229_050 Hb_000861_100--Hb_003371_070 Hb_007537_030 Hb_007537_030 Hb_000861_100--Hb_007537_030 Hb_005305_120 Hb_005305_120 Hb_000861_100--Hb_005305_120 Hb_000861_100--Hb_004129_010 Hb_187959_010 Hb_187959_010 Hb_003030_010--Hb_187959_010 Hb_003030_010--Hb_004129_010 Hb_003030_010--Hb_007229_050 Hb_003030_010--Hb_001754_050 Hb_029584_100 Hb_029584_100 Hb_003030_010--Hb_029584_100 Hb_143766_080 Hb_143766_080 Hb_003030_010--Hb_143766_080 Hb_001474_020 Hb_001474_020 Hb_132840_160--Hb_001474_020 Hb_011360_110 Hb_011360_110 Hb_132840_160--Hb_011360_110 Hb_002046_060 Hb_002046_060 Hb_132840_160--Hb_002046_060 Hb_132840_160--Hb_003371_070 Hb_132840_160--Hb_000057_130 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_000023_310 Hb_000023_310 Hb_003371_070--Hb_000023_310 Hb_003371_070--Hb_007537_030 Hb_001754_050--Hb_143766_080 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272791 13.753 13.799 26.7233 0.453848 0.311747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82504 5.01309 7.11523 18.5047 16.7478

CAGE analysis