Hb_001754_050

Information

Type -
Description -
Location Contig1754: 35315-43590
Sequence    

Annotation

kegg
ID rcu:RCOM_0681060
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_002516920.1
description protein arginine n-methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT51
description Protein arginine n-methyltransferase, putative OS=Ricinus communis GN=RCOM_0681060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16790: 37250-37419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_050 0.0 - - protein arginine n-methyltransferase, putative [Ricinus communis]
2 Hb_143766_080 0.0740815858 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
3 Hb_004129_010 0.0775152935 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_000392_250 0.0883377749 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
5 Hb_004883_020 0.0973317976 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
6 Hb_000057_130 0.1083030893 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_004218_130 0.1085994471 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
8 Hb_007229_050 0.1137245632 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
9 Hb_007575_030 0.1138323736 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
10 Hb_003030_010 0.1148766159 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
11 Hb_012053_020 0.117675046 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
12 Hb_000098_180 0.1194514855 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
13 Hb_012760_090 0.1224201303 - - Aspartic proteinase-like protein 1 [Morus notabilis]
14 Hb_172706_020 0.1233662395 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_005545_020 0.1251152975 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
16 Hb_000000_480 0.125645229 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
17 Hb_000157_140 0.1256505016 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000861_100 0.126380468 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
19 Hb_124315_010 0.1283469842 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
20 Hb_003710_020 0.128511856 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_050 Hb_001754_050 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_004129_010 Hb_004129_010 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_003710_020 Hb_003710_020 Hb_143766_080--Hb_003710_020 Hb_143766_080--Hb_004129_010 Hb_004522_030 Hb_004522_030 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_143766_080--Hb_004883_020 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_010534_020 Hb_010534_020 Hb_000392_250--Hb_010534_020 Hb_172706_020 Hb_172706_020 Hb_000392_250--Hb_172706_020 Hb_000622_330 Hb_000622_330 Hb_000392_250--Hb_000622_330 Hb_012053_020 Hb_012053_020 Hb_000392_250--Hb_012053_020 Hb_000392_250--Hb_004218_130 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000861_100 Hb_000861_100 Hb_000057_130--Hb_000861_100 Hb_003371_070 Hb_003371_070 Hb_000057_130--Hb_003371_070 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414816 0.534413 0.993258 1.14952 0.0596065 0.0954927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165026 0.204043 0.175687 0.856381 0.743949

CAGE analysis