Hb_172706_020

Information

Type -
Description -
Location Contig172706: 24327-29313
Sequence    

Annotation

kegg
ID rcu:RCOM_1241260
description Protein ABIL2, putative
nr
ID XP_012080675.1
description PREDICTED: protein ABIL2 [Jatropha curcas]
swissprot
ID Q9M3A3
description Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=2 SV=1
trembl
ID A0A067LLC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18175 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16375: 24377-24512 , PASA_asmbl_16376: 24515-28428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172706_020 0.0 - - PREDICTED: protein ABIL2 [Jatropha curcas]
2 Hb_000940_210 0.0955535269 - - cyclophilin [Hevea brasiliensis]
3 Hb_023226_030 0.1029403362 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
4 Hb_002518_090 0.1076039583 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
5 Hb_034507_060 0.1104367638 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
6 Hb_004218_130 0.113076849 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
7 Hb_000309_030 0.1137207539 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
8 Hb_000220_110 0.1205510714 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
9 Hb_000392_250 0.1211832978 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
10 Hb_004883_020 0.1223851373 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
11 Hb_003430_080 0.1233449712 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001754_050 0.1233662395 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_143766_080 0.1264286732 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
14 Hb_000098_180 0.1270300666 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
15 Hb_007575_030 0.1294700804 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_000116_240 0.1362343546 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
17 Hb_005694_180 0.136984237 - - PREDICTED: cytochrome b5 [Jatropha curcas]
18 Hb_000567_090 0.1375556029 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
19 Hb_003740_020 0.1388886221 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_015778_040 0.1393119635 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]

Gene co-expression network

sample Hb_172706_020 Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_023226_030--Hb_034507_060 Hb_023226_030--Hb_003430_080 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_002518_090--Hb_000940_210 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_002518_090--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_000116_240 Hb_000116_240 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_000309_030--Hb_004883_020 Hb_000318_170 Hb_000318_170 Hb_000309_030--Hb_000318_170 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11065 4.44113 9.41329 10.0098 0.627295 1.13306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32797 2.28683 0.596547 7.02625 3.57256

CAGE analysis