Hb_124677_030

Information

Type -
Description -
Location Contig124677: 20121-27705
Sequence    

Annotation

kegg
ID rcu:RCOM_1577200
description hypothetical protein
nr
ID XP_012092774.1
description PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID A0A067J8S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07911 PE=4 SV=1
Gene Ontology
ID GO:0080008
description transducin wd40 repeat-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07451: 20029-21317 , PASA_asmbl_07452: 22298-23792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_030 0.0 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
2 Hb_188281_030 0.0892052822 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
3 Hb_000940_210 0.1111048491 - - cyclophilin [Hevea brasiliensis]
4 Hb_000345_460 0.1230424546 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
5 Hb_001232_090 0.1310014679 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_010534_020 0.1399355063 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
7 Hb_000684_120 0.1419660492 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
8 Hb_007850_030 0.1436341145 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
9 Hb_004117_190 0.1489809719 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
10 Hb_000580_100 0.1490314171 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
11 Hb_000116_560 0.1492858464 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
12 Hb_013405_070 0.1496321822 - - ferric-chelate reductase, putative [Ricinus communis]
13 Hb_004032_210 0.1501211869 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002960_090 0.1511394594 - - protein with unknown function [Ricinus communis]
15 Hb_002027_440 0.15119616 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011242_050 0.1514915811 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
17 Hb_000331_350 0.1515854133 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
18 Hb_000282_050 0.1532732663 - - calcineurin B, putative [Ricinus communis]
19 Hb_018845_010 0.1554027703 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
20 Hb_003813_060 0.1563534767 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_124677_030 Hb_124677_030 Hb_188281_030 Hb_188281_030 Hb_124677_030--Hb_188281_030 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_000345_460 Hb_000345_460 Hb_124677_030--Hb_000345_460 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120 Hb_188281_030--Hb_000345_460 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_002027_440 Hb_002027_440 Hb_188281_030--Hb_002027_440 Hb_001221_030 Hb_001221_030 Hb_188281_030--Hb_001221_030 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_000345_460--Hb_002027_440 Hb_000005_110 Hb_000005_110 Hb_000345_460--Hb_000005_110 Hb_011242_050 Hb_011242_050 Hb_000345_460--Hb_011242_050 Hb_000345_460--Hb_001221_030 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_010534_020--Hb_005271_140 Hb_000392_250 Hb_000392_250 Hb_010534_020--Hb_000392_250 Hb_000300_100 Hb_000300_100 Hb_010534_020--Hb_000300_100 Hb_010534_020--Hb_001232_090 Hb_000757_130 Hb_000757_130 Hb_010534_020--Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_010534_020--Hb_029253_010 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000563_440 Hb_000563_440 Hb_000684_120--Hb_000563_440 Hb_000684_120--Hb_005271_140 Hb_000684_120--Hb_001232_090 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131914 0.287016 1.61402 1.53593 0.190361 0.163829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392014 0.575738 0.194215 0.794588 0.389463

CAGE analysis