Hb_011242_050

Information

Type -
Description -
Location Contig11242: 54108-56464
Sequence    

Annotation

kegg
ID rcu:RCOM_1615890
description ubiquitin-conjugating enzyme h, putative (EC:6.3.2.19)
nr
ID XP_012083357.1
description PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
swissprot
ID P42749
description Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2
trembl
ID A0A067JXB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14377 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin carrier protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03831: 54088-56429 , PASA_asmbl_03832: 55402-55827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_050 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
2 Hb_002027_440 0.0754877979 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001863_070 0.1031165266 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
4 Hb_001329_070 0.1197385487 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_000206_230 0.1226233172 - - conserved hypothetical protein [Ricinus communis]
6 Hb_188281_030 0.1289901888 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
7 Hb_000345_460 0.1326689802 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
8 Hb_015807_160 0.1456841092 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
9 Hb_003602_060 0.1507339746 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
10 Hb_124677_030 0.1514915811 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
11 Hb_013405_070 0.1534694614 - - ferric-chelate reductase, putative [Ricinus communis]
12 Hb_001114_170 0.1571442036 - - conserved hypothetical protein [Ricinus communis]
13 Hb_093458_010 0.159208429 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
14 Hb_002016_140 0.1599480729 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
15 Hb_000800_020 0.161689978 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
16 Hb_006711_090 0.1639610066 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
17 Hb_001767_060 0.1644388126 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_000116_560 0.1650023495 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
19 Hb_154038_020 0.1671352161 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
20 Hb_000331_350 0.172262129 - - hypothetical protein JCGZ_11337 [Jatropha curcas]

Gene co-expression network

sample Hb_011242_050 Hb_011242_050 Hb_002027_440 Hb_002027_440 Hb_011242_050--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_011242_050--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_011242_050--Hb_001329_070 Hb_000206_230 Hb_000206_230 Hb_011242_050--Hb_000206_230 Hb_188281_030 Hb_188281_030 Hb_011242_050--Hb_188281_030 Hb_000345_460 Hb_000345_460 Hb_011242_050--Hb_000345_460 Hb_002027_440--Hb_001863_070 Hb_002027_440--Hb_001329_070 Hb_002027_440--Hb_000345_460 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_002027_440--Hb_188281_030 Hb_003602_060 Hb_003602_060 Hb_001863_070--Hb_003602_060 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_001329_070--Hb_013405_070 Hb_001329_070--Hb_003602_060 Hb_000206_230--Hb_002016_140 Hb_002007_320 Hb_002007_320 Hb_000206_230--Hb_002007_320 Hb_000310_120 Hb_000310_120 Hb_000206_230--Hb_000310_120 Hb_000206_230--Hb_013405_070 Hb_124677_030 Hb_124677_030 Hb_188281_030--Hb_124677_030 Hb_188281_030--Hb_000345_460 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_001221_030 Hb_001221_030 Hb_188281_030--Hb_001221_030 Hb_000345_460--Hb_124677_030 Hb_000005_110 Hb_000005_110 Hb_000345_460--Hb_000005_110 Hb_000345_460--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15493 5.96942 30.6241 29.0035 1.87554 2.72342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12091 22.2272 3.21576 12.5885 14.7884

CAGE analysis