Hb_002027_440

Information

Type -
Description -
Location Contig2027: 265444-267698
Sequence    

Annotation

kegg
ID rcu:RCOM_0556500
description hypothetical protein
nr
ID XP_002520687.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O82259
description Protein NETWORKED 3C OS=Arabidopsis thaliana GN=NET3C PE=1 SV=1
trembl
ID B9S3W8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20734: 266597-266874 , PASA_asmbl_20735: 267770-268320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_440 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011242_050 0.0754877979 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
3 Hb_001863_070 0.1097096445 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
4 Hb_001329_070 0.1115241597 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_000345_460 0.1175742803 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
6 Hb_013405_070 0.1250094548 - - ferric-chelate reductase, putative [Ricinus communis]
7 Hb_188281_030 0.126962715 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
8 Hb_068194_010 0.1350924531 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
9 Hb_000206_230 0.1363482919 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000800_020 0.1383234108 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
11 Hb_003602_060 0.139549802 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
12 Hb_001114_170 0.1426411521 - - conserved hypothetical protein [Ricinus communis]
13 Hb_089140_090 0.1427822302 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
14 Hb_015807_160 0.1445740013 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
15 Hb_154038_020 0.1460861129 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
16 Hb_000008_370 0.148506309 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
17 Hb_124677_030 0.15119616 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
18 Hb_000331_350 0.1512342864 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
19 Hb_001322_230 0.1520319558 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
20 Hb_006445_020 0.1530117614 - - hypothetical protein L484_026741 [Morus notabilis]

Gene co-expression network

sample Hb_002027_440 Hb_002027_440 Hb_011242_050 Hb_011242_050 Hb_002027_440--Hb_011242_050 Hb_001863_070 Hb_001863_070 Hb_002027_440--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_002027_440--Hb_001329_070 Hb_000345_460 Hb_000345_460 Hb_002027_440--Hb_000345_460 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_188281_030 Hb_188281_030 Hb_002027_440--Hb_188281_030 Hb_011242_050--Hb_001863_070 Hb_011242_050--Hb_001329_070 Hb_000206_230 Hb_000206_230 Hb_011242_050--Hb_000206_230 Hb_011242_050--Hb_188281_030 Hb_011242_050--Hb_000345_460 Hb_003602_060 Hb_003602_060 Hb_001863_070--Hb_003602_060 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_001329_070--Hb_013405_070 Hb_001329_070--Hb_003602_060 Hb_000345_460--Hb_188281_030 Hb_124677_030 Hb_124677_030 Hb_000345_460--Hb_124677_030 Hb_000005_110 Hb_000005_110 Hb_000345_460--Hb_000005_110 Hb_001221_030 Hb_001221_030 Hb_000345_460--Hb_001221_030 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_188281_030--Hb_124677_030 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_188281_030--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468877 0.866772 7.04933 4.57719 0.323274 0.593256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902777 3.49455 0.788576 1.96847 2.84358

CAGE analysis