Hb_000800_020

Information

Type -
Description -
Location Contig800: 58337-64784
Sequence    

Annotation

kegg
ID rcu:RCOM_0008410
description 3-phosphoinositide-dependent protein kinase-1, putative (EC:2.7.11.13)
nr
ID XP_012090189.1
description PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
swissprot
ID Q4V3C8
description 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana GN=PDPK2 PE=1 SV=1
trembl
ID B9T6S2
description 3-phosphoinositide-dependent protein kinase-1, putative OS=Ricinus communis GN=RCOM_0008410 PE=4 SV=1
Gene Ontology
ID GO:0004672
description 3-phosphoinositide-dependent protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58763: 60879-61237 , PASA_asmbl_58764: 63437-63733 , PASA_asmbl_58765: 58748-64757 , PASA_asmbl_58766: 58748-64266 , PASA_asmbl_58767: 58748-64757 , PASA_asmbl_58768: 58748-64266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000800_020 0.0 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
2 Hb_006588_190 0.086433143 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
3 Hb_013405_070 0.0884769206 - - ferric-chelate reductase, putative [Ricinus communis]
4 Hb_011671_340 0.0989368696 - - small GTPase [Hevea brasiliensis]
5 Hb_005511_130 0.1025162713 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
6 Hb_011381_040 0.1031338028 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
7 Hb_000984_220 0.1101250246 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_003687_080 0.1140277535 - - PREDICTED: casein kinase I-like [Jatropha curcas]
9 Hb_001863_070 0.114398192 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
10 Hb_029253_010 0.1211501524 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_003740_020 0.1211765779 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000327_330 0.1241005252 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004158_050 0.1248702587 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
14 Hb_002740_080 0.1275016424 - - flap endonuclease-1, putative [Ricinus communis]
15 Hb_008725_270 0.1279878141 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
16 Hb_003086_040 0.1293988218 - - PREDICTED: uncharacterized protein LOC105635780 isoform X2 [Jatropha curcas]
17 Hb_000364_170 0.1306002611 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
18 Hb_005665_090 0.1315796237 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
19 Hb_003271_040 0.1328187965 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
20 Hb_001160_110 0.1346209258 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000800_020 Hb_000800_020 Hb_006588_190 Hb_006588_190 Hb_000800_020--Hb_006588_190 Hb_013405_070 Hb_013405_070 Hb_000800_020--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_000800_020--Hb_011671_340 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_011381_040 Hb_011381_040 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_006588_190--Hb_011381_040 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_007217_010 Hb_007217_010 Hb_006588_190--Hb_007217_010 Hb_000163_260 Hb_000163_260 Hb_006588_190--Hb_000163_260 Hb_001009_140 Hb_001009_140 Hb_006588_190--Hb_001009_140 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_001155_050 Hb_001155_050 Hb_011671_340--Hb_001155_050 Hb_007426_220 Hb_007426_220 Hb_011671_340--Hb_007426_220 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_029253_010 Hb_029253_010 Hb_011671_340--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000032_410 Hb_000032_410 Hb_005511_130--Hb_000032_410 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005357_110 Hb_005357_110 Hb_005511_130--Hb_005357_110 Hb_003835_110 Hb_003835_110 Hb_011381_040--Hb_003835_110 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_002027_320 Hb_002027_320 Hb_011381_040--Hb_002027_320 Hb_000984_220--Hb_004730_020 Hb_001160_110 Hb_001160_110 Hb_000984_220--Hb_001160_110 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55358 6.32941 25.1224 18.2898 3.56697 4.21305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59423 7.95573 2.85176 5.43034 11.649

CAGE analysis