Hb_002027_320

Information

Type -
Description -
Location Contig2027: 192565-196980
Sequence    

Annotation

kegg
ID rcu:RCOM_0556860
description RNA binding protein, putative
nr
ID XP_012092351.1
description PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
swissprot
ID Q8LFS6
description RNA-binding protein BRN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1
trembl
ID A0A067JCH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22017 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cugbp elav-like family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20720: 192614-196913 , PASA_asmbl_20721: 195668-195923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_320 0.0 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
2 Hb_007263_010 0.0744938604 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_000392_450 0.0805999333 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
4 Hb_004994_080 0.0897696744 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_011386_050 0.0961181635 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
6 Hb_011381_040 0.1000485584 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
7 Hb_000181_060 0.1001417762 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
8 Hb_007217_010 0.1011273047 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
9 Hb_003835_110 0.1016169398 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
10 Hb_001102_050 0.1047330685 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
11 Hb_007451_040 0.1056880956 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_006555_040 0.107333526 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
13 Hb_002871_040 0.1085382346 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_000905_120 0.1127462518 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
15 Hb_003874_010 0.113008155 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
16 Hb_000284_130 0.1154863474 - - sodium-bile acid cotransporter, putative [Ricinus communis]
17 Hb_004517_030 0.1189729238 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004221_030 0.1191862124 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
19 Hb_000140_440 0.1195917361 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
20 Hb_021732_010 0.1197050372 - - biotin carboxylase [Vernicia fordii]

Gene co-expression network

sample Hb_002027_320 Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_007263_010--Hb_004994_080 Hb_007263_010--Hb_000392_450 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_007263_010--Hb_011386_050 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_004994_080--Hb_006555_040 Hb_000340_130 Hb_000340_130 Hb_011386_050--Hb_000340_130 Hb_011386_050--Hb_006555_040 Hb_011386_050--Hb_000364_100 Hb_003835_110 Hb_003835_110 Hb_011381_040--Hb_003835_110 Hb_006588_190 Hb_006588_190 Hb_011381_040--Hb_006588_190 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_000181_060--Hb_007263_010 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98423 1.16697 12.1092 3.42889 2.16891 1.73061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87765 2.26657 1.6446 2.0233 4.55934

CAGE analysis