Hb_004517_030

Information

Type -
Description -
Location Contig4517: 35184-42068
Sequence    

Annotation

kegg
ID rcu:RCOM_1039450
description hypothetical protein
nr
ID XP_002514042.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L7W1
description Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=1 SV=1
trembl
ID B9RJX3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039450 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43206: 35190-41920 , PASA_asmbl_43207: 40401-40636 , PASA_asmbl_43210: 38226-39433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004517_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000392_450 0.0617887328 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
3 Hb_000212_250 0.0876901461 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007217_010 0.1045802418 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_001386_090 0.1094271054 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
6 Hb_003397_030 0.1107583122 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
7 Hb_003874_010 0.11613058 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_002027_320 0.1189729238 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
9 Hb_153553_040 0.1268691597 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
10 Hb_000438_130 0.1280091487 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
11 Hb_003160_070 0.1305552979 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
12 Hb_007263_010 0.1323541655 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_005527_060 0.1359504736 - - malic enzyme, putative [Ricinus communis]
14 Hb_002942_120 0.136690319 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
15 Hb_007123_080 0.1377503295 - - big map kinase/bmk, putative [Ricinus communis]
16 Hb_011381_040 0.1397756206 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
17 Hb_002871_040 0.1397855235 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
18 Hb_000347_140 0.1402047243 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_001141_050 0.1409363378 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
20 Hb_001711_060 0.1431366591 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004517_030 Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_004517_030--Hb_000392_450 Hb_000212_250 Hb_000212_250 Hb_004517_030--Hb_000212_250 Hb_007217_010 Hb_007217_010 Hb_004517_030--Hb_007217_010 Hb_001386_090 Hb_001386_090 Hb_004517_030--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_004517_030--Hb_003397_030 Hb_003874_010 Hb_003874_010 Hb_004517_030--Hb_003874_010 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_000392_450--Hb_003874_010 Hb_000392_450--Hb_007217_010 Hb_000392_450--Hb_000212_250 Hb_000212_250--Hb_007217_010 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_011476_030 Hb_011476_030 Hb_000212_250--Hb_011476_030 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_001386_090--Hb_003397_030 Hb_000438_130 Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001711_060 Hb_001711_060 Hb_001386_090--Hb_001711_060 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_001386_090--Hb_000392_450 Hb_003397_030--Hb_000169_070 Hb_003397_030--Hb_001711_060 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_003397_030--Hb_000438_130 Hb_003430_040 Hb_003430_040 Hb_003874_010--Hb_003430_040 Hb_003874_010--Hb_002027_320 Hb_003874_010--Hb_007263_010 Hb_000300_710 Hb_000300_710 Hb_003874_010--Hb_000300_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39979 2.03118 17.7037 4.21999 1.41269 1.59304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48424 1.97559 1.11555 2.41596 5.77043

CAGE analysis