Hb_000300_710

Information

Type -
Description -
Location Contig300: 616209-617030
Sequence    

Annotation

kegg
ID rcu:RCOM_1121640
description hypothetical protein
nr
ID XP_011021479.1
description PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SHF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121640 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31647: 616268-616968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_710 0.0 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
2 Hb_074792_010 0.0992812219 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
3 Hb_000347_140 0.1099622948 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_003874_010 0.1205857051 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
5 Hb_003430_040 0.1227639891 - - spermidine synthase 1, putative [Ricinus communis]
6 Hb_188739_010 0.1238923376 - - protein binding protein, putative [Ricinus communis]
7 Hb_000424_070 0.1274557534 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
8 Hb_006618_070 0.1296040882 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
9 Hb_000392_450 0.1315033579 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
10 Hb_000732_030 0.1355763641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000123_140 0.1358338013 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
12 Hb_000211_040 0.1376759601 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
13 Hb_001975_050 0.1386639668 - - Tyrosine-specific transport protein, putative [Ricinus communis]
14 Hb_000120_350 0.139145975 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
15 Hb_006555_040 0.1447718351 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
16 Hb_007263_010 0.1448085071 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_153553_040 0.1461891779 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
18 Hb_006935_040 0.1462689421 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
19 Hb_004517_030 0.1467136545 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011609_010 0.1474577872 - - PREDICTED: zinc transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_710 Hb_000300_710 Hb_074792_010 Hb_074792_010 Hb_000300_710--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000300_710--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_003430_040 Hb_003430_040 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_074792_010--Hb_003430_040 Hb_074792_010--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_074792_010--Hb_000732_030 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_000347_140--Hb_003430_040 Hb_000347_140--Hb_188739_010 Hb_000032_200 Hb_000032_200 Hb_000347_140--Hb_000032_200 Hb_000347_140--Hb_000638_260 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_003874_010--Hb_003430_040 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_003430_040--Hb_000732_030 Hb_003430_040--Hb_000032_200 Hb_002435_090 Hb_002435_090 Hb_188739_010--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_188739_010--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_188739_010--Hb_001975_050 Hb_001343_120 Hb_001343_120 Hb_188739_010--Hb_001343_120 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.799 27.1119 160.092 31.3256 20.6011 20.1955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.67016 15.7203 4.72496 8.28605 36.5473

CAGE analysis