Hb_029622_030

Information

Type -
Description -
Location Contig29622: 17230-18638
Sequence    

Annotation

kegg
ID rcu:RCOM_1501410
description ankyrin repeat-containing protein, putative
nr
ID XP_002511002.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9R9X7
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1501410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30991: 17171-18767 , PASA_asmbl_30992: 17866-18767 , PASA_asmbl_30993: 17171-17851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_030 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_015026_020 0.1132015508 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
3 Hb_000928_250 0.1141206715 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_000424_070 0.1276365533 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
5 Hb_003106_200 0.1300426761 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_000345_290 0.1333924894 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000212_300 0.1366120198 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_006935_040 0.1414409038 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
9 Hb_001369_030 0.1477130626 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
10 Hb_001894_160 0.1478173779 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005194_040 0.1503552645 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_153553_040 0.1519395478 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
13 Hb_000123_140 0.1570215753 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
14 Hb_000076_100 0.1578866436 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
15 Hb_000684_100 0.1580334121 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
16 Hb_155025_010 0.1584765953 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_001409_060 0.1610212983 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
18 Hb_000818_120 0.162043443 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005941_020 0.162615701 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
20 Hb_000313_290 0.1628825422 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_029622_030 Hb_029622_030 Hb_015026_020 Hb_015026_020 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_000424_070 Hb_000424_070 Hb_029622_030--Hb_000424_070 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_000345_290 Hb_000345_290 Hb_029622_030--Hb_000345_290 Hb_000212_300 Hb_000212_300 Hb_029622_030--Hb_000212_300 Hb_015026_020--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_015026_020--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_015026_020--Hb_011671_110 Hb_015026_020--Hb_003106_200 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_000928_250--Hb_003106_200 Hb_000928_250--Hb_001894_160 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_001369_030 Hb_001369_030 Hb_000345_290--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000345_290--Hb_000062_360 Hb_000345_290--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000345_290--Hb_001322_020 Hb_006555_040 Hb_006555_040 Hb_000345_290--Hb_006555_040 Hb_000212_300--Hb_001369_030 Hb_000212_300--Hb_000062_360 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_000212_300--Hb_011671_110 Hb_000212_300--Hb_015026_020 Hb_000212_300--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927832 5.40635 12.3451 1.85808 2.15605 1.4717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54247 1.30007 1.18719 0.901384 4.20394

CAGE analysis