Hb_000424_070

Information

Type -
Description -
Location Contig424: 104714-111191
Sequence    

Annotation

kegg
ID rcu:RCOM_0707610
description hypothetical protein
nr
ID XP_012077185.1
description PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41908: 104895-106447 , PASA_asmbl_41909: 110475-111153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_070 0.0 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
2 Hb_000300_710 0.1274557534 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
3 Hb_029622_030 0.1276365533 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000010_130 0.1303663599 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
5 Hb_000211_040 0.1358769689 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
6 Hb_002960_110 0.1368401134 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
7 Hb_005194_040 0.1369394631 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_001930_030 0.1395262218 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
9 Hb_011609_010 0.1409839819 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
10 Hb_006618_070 0.141502395 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
11 Hb_000345_290 0.141888157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000313_290 0.1438374545 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_006555_040 0.1439459871 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
14 Hb_001624_040 0.1457438311 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
15 Hb_000123_140 0.1462942332 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
16 Hb_008725_140 0.1514191698 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
17 Hb_074792_010 0.1519931313 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
18 Hb_015292_040 0.1543574136 - - PREDICTED: myb-like protein X [Jatropha curcas]
19 Hb_155025_010 0.1573827024 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_000418_090 0.1578373627 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000424_070 Hb_000424_070 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_074792_010 Hb_074792_010 Hb_000300_710--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000300_710--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_003430_040 Hb_003430_040 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_015026_020 Hb_015026_020 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_000345_290 Hb_000345_290 Hb_029622_030--Hb_000345_290 Hb_000212_300 Hb_000212_300 Hb_029622_030--Hb_000212_300 Hb_015292_040 Hb_015292_040 Hb_000010_130--Hb_015292_040 Hb_000313_290 Hb_000313_290 Hb_000010_130--Hb_000313_290 Hb_030131_020 Hb_030131_020 Hb_000010_130--Hb_030131_020 Hb_000418_090 Hb_000418_090 Hb_000010_130--Hb_000418_090 Hb_006618_070 Hb_006618_070 Hb_000010_130--Hb_006618_070 Hb_000211_040--Hb_015292_040 Hb_006555_040 Hb_006555_040 Hb_000211_040--Hb_006555_040 Hb_000123_140 Hb_000123_140 Hb_000211_040--Hb_000123_140 Hb_000140_440 Hb_000140_440 Hb_000211_040--Hb_000140_440 Hb_004994_080 Hb_004994_080 Hb_000211_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_000211_040--Hb_007263_010 Hb_002960_110--Hb_074792_010 Hb_000189_390 Hb_000189_390 Hb_002960_110--Hb_000189_390 Hb_003529_180 Hb_003529_180 Hb_002960_110--Hb_003529_180 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_005194_040--Hb_029622_030 Hb_006935_040 Hb_006935_040 Hb_005194_040--Hb_006935_040 Hb_005194_040--Hb_000313_290 Hb_006846_160 Hb_006846_160 Hb_005194_040--Hb_006846_160 Hb_005194_040--Hb_000300_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2653 73.8939 272.642 34.0898 76.9769 46.3002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2182 25.6845 15.9828 15.4084 78.0221

CAGE analysis