Hb_005194_040

Information

Type transcription factor
Description TF Family: LOB
Location Contig5194: 70447-71894
Sequence    

Annotation

kegg
ID rcu:RCOM_0578520
description LOB domain-containing protein, putative
nr
ID XP_002525255.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SN23
description LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1
trembl
ID B9SGY6
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0578520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46657: 70666-71908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005194_040 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_000424_070 0.1369394631 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
3 Hb_029622_030 0.1503552645 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_006935_040 0.1701246025 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
5 Hb_000313_290 0.1704348131 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_006846_160 0.1745880645 - - electron transporter, putative [Ricinus communis]
7 Hb_000300_710 0.1763745113 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
8 Hb_001975_050 0.1788588714 - - Tyrosine-specific transport protein, putative [Ricinus communis]
9 Hb_000123_140 0.1795883726 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
10 Hb_140360_010 0.185388581 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
11 Hb_188739_010 0.1857867168 - - protein binding protein, putative [Ricinus communis]
12 Hb_000538_130 0.1858307381 - - phytoene synthase 2 [Manihot esculenta]
13 Hb_074792_010 0.186917129 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
14 Hb_010318_010 0.1876125793 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_003992_050 0.1879831377 - - delta 9 desaturase, putative [Ricinus communis]
16 Hb_006618_070 0.188870629 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
17 Hb_002960_110 0.1926530415 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
18 Hb_000637_070 0.193054844 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
19 Hb_000136_020 0.1933773279 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
20 Hb_002435_090 0.1945793488 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005194_040 Hb_005194_040 Hb_000424_070 Hb_000424_070 Hb_005194_040--Hb_000424_070 Hb_029622_030 Hb_029622_030 Hb_005194_040--Hb_029622_030 Hb_006935_040 Hb_006935_040 Hb_005194_040--Hb_006935_040 Hb_000313_290 Hb_000313_290 Hb_005194_040--Hb_000313_290 Hb_006846_160 Hb_006846_160 Hb_005194_040--Hb_006846_160 Hb_000300_710 Hb_000300_710 Hb_005194_040--Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_015026_020 Hb_015026_020 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_000345_290 Hb_000345_290 Hb_029622_030--Hb_000345_290 Hb_000212_300 Hb_000212_300 Hb_029622_030--Hb_000212_300 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_000008_390 Hb_000008_390 Hb_006935_040--Hb_000008_390 Hb_006935_040--Hb_015026_020 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050 Hb_000418_090 Hb_000418_090 Hb_000313_290--Hb_000418_090 Hb_001624_040 Hb_001624_040 Hb_000313_290--Hb_001624_040 Hb_000331_340 Hb_000331_340 Hb_000313_290--Hb_000331_340 Hb_003683_030 Hb_003683_030 Hb_000313_290--Hb_003683_030 Hb_001250_040 Hb_001250_040 Hb_000313_290--Hb_001250_040 Hb_000313_290--Hb_000010_130 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_000322_040 Hb_000322_040 Hb_006846_160--Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040 Hb_074792_010 Hb_074792_010 Hb_000300_710--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000300_710--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_003430_040 Hb_003430_040 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8082 82.8313 352.82 38.1013 76.1129 25.4645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.3688 19.1402 8.56246 4.64653 108.649

CAGE analysis