Hb_001250_040

Information

Type -
Description -
Location Contig1250: 28093-29349
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO82355.1
description hypothetical protein CISIN_1g018444mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GUJ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018444mg PE=4 SV=1
Gene Ontology
ID GO:0003723
description crs2-associated factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07629: 15708-29668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_040 0.0 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
2 Hb_001689_050 0.0878379314 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
3 Hb_003683_030 0.0917482342 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
4 Hb_000136_020 0.1065420035 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
5 Hb_001571_030 0.1123873005 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
6 Hb_007594_080 0.1127570436 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
7 Hb_001624_040 0.1149057416 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
8 Hb_002301_210 0.1169771389 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
9 Hb_002447_050 0.1191183994 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004324_210 0.1213034977 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_000749_200 0.1232366491 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
12 Hb_001863_340 0.127854831 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
13 Hb_001663_130 0.1299708925 - - acyl-CoA thioesterase, putative [Ricinus communis]
14 Hb_007576_070 0.1300706768 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
15 Hb_000928_250 0.1312159075 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_003894_060 0.1320911325 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000313_290 0.1339198942 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_004158_050 0.1342654453 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
19 Hb_000836_350 0.1342656467 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
20 Hb_153553_040 0.13496459 - - hypothetical protein JCGZ_19478 [Jatropha curcas]

Gene co-expression network

sample Hb_001250_040 Hb_001250_040 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_001689_050--Hb_003683_030 Hb_001689_050--Hb_007594_080 Hb_003894_060 Hb_003894_060 Hb_001689_050--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_001689_050--Hb_004837_210 Hb_001953_100 Hb_001953_100 Hb_001689_050--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_003683_030--Hb_003894_060 Hb_003683_030--Hb_004837_210 Hb_003683_030--Hb_001953_100 Hb_000136_020--Hb_001571_030 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_000805_200 Hb_000805_200 Hb_001571_030--Hb_000805_200 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_011609_010 Hb_011609_010 Hb_001624_040--Hb_011609_010 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_000803_090 Hb_000803_090 Hb_001624_040--Hb_000803_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68472 26.4235 58.6744 20.7326 12.0865 10.6502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55845 3.38516 3.5828 5.01432 38.1515

CAGE analysis