Hb_000803_090

Information

Type -
Description -
Location Contig803: 141378-143387
Sequence    

Annotation

kegg
ID rcu:RCOM_1578680
description transcription initiation factor iib, putative
nr
ID XP_012090034.1
description PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
swissprot
ID Q8W0W3
description Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1
trembl
ID A0A067JE24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25947 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor iib

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58883: 141390-143348 , PASA_asmbl_58884: 141390-143279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_090 0.0 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
2 Hb_011609_010 0.0741756477 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
3 Hb_003747_050 0.1075591998 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
4 Hb_000008_390 0.1109534954 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
5 Hb_001624_040 0.1139282255 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
6 Hb_002301_210 0.1200276274 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
7 Hb_000631_090 0.122145785 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
8 Hb_000212_300 0.1228490843 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
9 Hb_054865_020 0.1278669109 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
10 Hb_000189_390 0.1284513472 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
11 Hb_000062_360 0.1287356252 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
12 Hb_075203_010 0.1304018452 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
13 Hb_007777_010 0.1323242623 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
14 Hb_014497_030 0.1323839716 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
15 Hb_011671_110 0.1328917617 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
16 Hb_001621_110 0.133128612 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
17 Hb_002026_090 0.1374656517 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
18 Hb_015026_020 0.1384941335 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
19 Hb_000317_190 0.1390494657 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
20 Hb_002600_130 0.1391685773 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_090 Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_000803_090--Hb_011609_010 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_001624_040 Hb_001624_040 Hb_000803_090--Hb_001624_040 Hb_002301_210 Hb_002301_210 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_011609_010--Hb_001624_040 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190 Hb_000086_180 Hb_000086_180 Hb_000008_390--Hb_000086_180 Hb_006935_040 Hb_006935_040 Hb_000008_390--Hb_006935_040 Hb_000959_190 Hb_000959_190 Hb_000008_390--Hb_000959_190 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_001250_040 Hb_001250_040 Hb_002301_210--Hb_001250_040 Hb_001689_050 Hb_001689_050 Hb_002301_210--Hb_001689_050 Hb_000076_090 Hb_000076_090 Hb_002301_210--Hb_000076_090 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_000045_160 Hb_000045_160 Hb_000631_090--Hb_000045_160 Hb_054865_020 Hb_054865_020 Hb_000631_090--Hb_054865_020 Hb_000470_110 Hb_000470_110 Hb_000631_090--Hb_000470_110 Hb_011930_100 Hb_011930_100 Hb_000631_090--Hb_011930_100 Hb_002307_080 Hb_002307_080 Hb_000631_090--Hb_002307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.10593 14.1678 35.6571 11.6193 5.67539 8.10194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09714 1.36031 1.56765 5.835 9.20452

CAGE analysis