Hb_000470_110

Information

Type -
Description -
Location Contig470: 171324-174700
Sequence    

Annotation

kegg
ID rcu:RCOM_1093220
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012078969.1
description PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
swissprot
ID Q55GU0
description Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1
trembl
ID A0A067LBM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17384 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lim domain-containing serine threonine-protein kinase ddb_g0287001

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44215: 171681-172344 , PASA_asmbl_44216: 172406-174752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000470_110 0.0 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
2 Hb_002809_160 0.0979759577 - - PREDICTED: protein FAM63A [Jatropha curcas]
3 Hb_004718_060 0.1033787486 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_001878_060 0.1042012019 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
5 Hb_011457_140 0.1066858067 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
6 Hb_000631_090 0.1101650184 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
7 Hb_054865_020 0.1146753881 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
8 Hb_001414_010 0.1159937176 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_000045_160 0.1160559889 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_000260_760 0.1163015889 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
11 Hb_009078_020 0.1172441797 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
12 Hb_001408_020 0.1183425109 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
13 Hb_000046_600 0.1204177749 - - PREDICTED: cullin-1-like [Jatropha curcas]
14 Hb_002740_040 0.1216955185 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
15 Hb_000477_070 0.1220814276 - - histone h2a, putative [Ricinus communis]
16 Hb_005403_010 0.1222770894 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
17 Hb_024758_020 0.1224189448 - - acyl-CoA binding protein 3B [Vernicia fordii]
18 Hb_000172_360 0.1229695044 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
19 Hb_009178_010 0.1254408751 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
20 Hb_114943_020 0.1255713313 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000470_110 Hb_000470_110 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_001878_060 Hb_001878_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000631_090 Hb_000631_090 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_009078_020 Hb_009078_020 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_009178_010 Hb_009178_010 Hb_004718_060--Hb_009178_010 Hb_000956_040 Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_005873_020 Hb_005873_020 Hb_004718_060--Hb_005873_020 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_004718_060--Hb_000260_760 Hb_016461_020 Hb_016461_020 Hb_001878_060--Hb_016461_020 Hb_000579_130 Hb_000579_130 Hb_001878_060--Hb_000579_130 Hb_002739_120 Hb_002739_120 Hb_001878_060--Hb_002739_120 Hb_008165_020 Hb_008165_020 Hb_001878_060--Hb_008165_020 Hb_001675_320 Hb_001675_320 Hb_001878_060--Hb_001675_320 Hb_001085_080 Hb_001085_080 Hb_001878_060--Hb_001085_080 Hb_000358_220 Hb_000358_220 Hb_011457_140--Hb_000358_220 Hb_008642_060 Hb_008642_060 Hb_011457_140--Hb_008642_060 Hb_000300_030 Hb_000300_030 Hb_011457_140--Hb_000300_030 Hb_000008_280 Hb_000008_280 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160 Hb_000045_160 Hb_000045_160 Hb_000631_090--Hb_000045_160 Hb_000631_090--Hb_054865_020 Hb_011930_100 Hb_011930_100 Hb_000631_090--Hb_011930_100 Hb_002307_080 Hb_002307_080 Hb_000631_090--Hb_002307_080 Hb_000803_090 Hb_000803_090 Hb_000631_090--Hb_000803_090 Hb_054865_020--Hb_005873_020 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_052128_010 Hb_052128_010 Hb_054865_020--Hb_052128_010 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74476 6.20004 6.04736 5.43589 1.70575 3.79122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.695376 0.723641 0.803388 3.60203 4.43946

CAGE analysis