Hb_005873_020

Information

Type -
Description -
Location Contig5873: 36921-42740
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06110g
description hypothetical protein
nr
ID XP_012066590.1
description PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
swissprot
ID B9KXV3
description ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH1 PE=3 SV=1
trembl
ID U5GB60
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06110g PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50009: 40818-42697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005873_020 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
2 Hb_054865_020 0.0733635412 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
3 Hb_004718_060 0.0771706128 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_009178_010 0.0889847054 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
5 Hb_008387_010 0.0929818101 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
6 Hb_003925_060 0.0960982696 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
7 Hb_000878_160 0.0974971634 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
8 Hb_000098_240 0.0981819588 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
9 Hb_000453_230 0.1034086222 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_001369_030 0.1076264282 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
11 Hb_002811_040 0.1078133247 - - 5'->3' exoribonuclease, putative [Ricinus communis]
12 Hb_000836_540 0.110511861 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
13 Hb_000245_150 0.1108374245 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_004724_370 0.1108507159 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
15 Hb_001396_020 0.11161135 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
16 Hb_008642_060 0.1128332119 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_026234_010 0.1131736231 - - choline monooxygenase, putative [Ricinus communis]
18 Hb_000956_040 0.1137135789 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
19 Hb_027380_210 0.1138018553 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
20 Hb_006573_160 0.1153902786 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_005873_020 Hb_005873_020 Hb_054865_020 Hb_054865_020 Hb_005873_020--Hb_054865_020 Hb_004718_060 Hb_004718_060 Hb_005873_020--Hb_004718_060 Hb_009178_010 Hb_009178_010 Hb_005873_020--Hb_009178_010 Hb_008387_010 Hb_008387_010 Hb_005873_020--Hb_008387_010 Hb_003925_060 Hb_003925_060 Hb_005873_020--Hb_003925_060 Hb_000878_160 Hb_000878_160 Hb_005873_020--Hb_000878_160 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_000631_090 Hb_000631_090 Hb_054865_020--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_054865_020--Hb_052128_010 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240 Hb_004718_060--Hb_009178_010 Hb_000956_040 Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_000172_360 Hb_000172_360 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_004718_060--Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_009178_010--Hb_000956_040 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_017214_040 Hb_017214_040 Hb_008387_010--Hb_017214_040 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_000640_190 Hb_000640_190 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_003925_060--Hb_002686_410 Hb_002461_020 Hb_002461_020 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_000878_160--Hb_009178_010 Hb_007283_010 Hb_007283_010 Hb_000878_160--Hb_007283_010 Hb_004324_330 Hb_004324_330 Hb_000878_160--Hb_004324_330 Hb_005333_140 Hb_005333_140 Hb_000878_160--Hb_005333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25555 13.2292 19.306 7.47505 4.69377 8.61069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71974 2.96624 2.05679 7.02452 11.3331

CAGE analysis