Hb_026234_010

Information

Type -
Description -
Location Contig26234: 4097-5124
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_002518256.1
description choline monooxygenase, putative [Ricinus communis]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9RWY7
description Choline monooxygenase, putative OS=Ricinus communis GN=RCOM_1706760 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline monooxygenase (cmo-like) isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026234_010 0.0 - - choline monooxygenase, putative [Ricinus communis]
2 Hb_008387_010 0.0765095259 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
3 Hb_016448_010 0.0804676512 - - Protein MYG1, putative [Ricinus communis]
4 Hb_000098_240 0.0895188952 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
5 Hb_001519_040 0.0979556363 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
6 Hb_003506_030 0.0993277776 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_007413_040 0.1005502464 - - myo inositol monophosphatase, putative [Ricinus communis]
8 Hb_000205_130 0.1008119763 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_002615_120 0.1033246084 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
10 Hb_009449_060 0.1060410283 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
11 Hb_033642_040 0.1070156049 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_005064_010 0.1072356699 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
13 Hb_005895_010 0.107805837 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
14 Hb_002249_020 0.108265714 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
15 Hb_004096_160 0.1083479034 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
16 Hb_002326_110 0.1084695948 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
17 Hb_000154_050 0.1095228575 - - CMP-sialic acid transporter, putative [Ricinus communis]
18 Hb_002870_020 0.1096053578 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
19 Hb_002485_030 0.1102160364 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_000236_490 0.110314147 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_026234_010 Hb_026234_010 Hb_008387_010 Hb_008387_010 Hb_026234_010--Hb_008387_010 Hb_016448_010 Hb_016448_010 Hb_026234_010--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_026234_010--Hb_000098_240 Hb_001519_040 Hb_001519_040 Hb_026234_010--Hb_001519_040 Hb_003506_030 Hb_003506_030 Hb_026234_010--Hb_003506_030 Hb_007413_040 Hb_007413_040 Hb_026234_010--Hb_007413_040 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_017214_040 Hb_017214_040 Hb_008387_010--Hb_017214_040 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_016448_010--Hb_000098_240 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_000878_160 Hb_000878_160 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150 Hb_006588_160 Hb_006588_160 Hb_001519_040--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_001519_040--Hb_000154_050 Hb_001519_040--Hb_016448_010 Hb_001519_040--Hb_000098_240 Hb_001824_030 Hb_001824_030 Hb_001519_040--Hb_001824_030 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_000019_190 Hb_000019_190 Hb_007413_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007413_040--Hb_023313_040 Hb_004096_160 Hb_004096_160 Hb_007413_040--Hb_004096_160 Hb_005730_010 Hb_005730_010 Hb_007413_040--Hb_005730_010 Hb_000236_490 Hb_000236_490 Hb_007413_040--Hb_000236_490 Hb_001931_030 Hb_001931_030 Hb_007413_040--Hb_001931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23584 1.43527 3.05691 1.89268 0.840145 1.62981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.711672 0.652386 0.480698 1.00081 1.23927

CAGE analysis