Hb_000236_490

Information

Type -
Description -
Location Contig236: 405155-408198
Sequence    

Annotation

kegg
ID rcu:RCOM_1172990
description 20 kD nuclear cap binding protein, putative
nr
ID XP_002517864.1
description 20 kD nuclear cap binding protein, putative [Ricinus communis]
swissprot
ID Q9XFD1
description Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1
trembl
ID B9RVU5
description 20 kD nuclear cap binding protein, putative OS=Ricinus communis GN=RCOM_1172990 PE=4 SV=1
Gene Ontology
ID GO:0005845
description nuclear cap-binding protein subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24738: 405171-408278 , PASA_asmbl_24739: 406357-406736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_490 0.0 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
2 Hb_004586_060 0.064898824 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
3 Hb_007062_040 0.0685277445 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
4 Hb_004096_160 0.0732634431 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
5 Hb_000513_090 0.0738023143 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
6 Hb_002909_040 0.074344262 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
7 Hb_001366_090 0.0757611851 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
8 Hb_007413_040 0.0770914492 - - myo inositol monophosphatase, putative [Ricinus communis]
9 Hb_005723_020 0.0775727562 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009449_060 0.0790714579 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
11 Hb_003096_060 0.0808344078 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
12 Hb_000737_030 0.081544344 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
13 Hb_005460_050 0.0819070543 - - COR413-PM2, putative [Ricinus communis]
14 Hb_007441_020 0.0843088495 - - Rab6 [Hevea brasiliensis]
15 Hb_000239_060 0.0857984337 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001135_120 0.0858894133 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
17 Hb_106552_020 0.0859404627 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
18 Hb_000879_180 0.0861541361 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_008568_020 0.0869475156 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
20 Hb_032990_010 0.0875155839 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000236_490 Hb_000236_490 Hb_004586_060 Hb_004586_060 Hb_000236_490--Hb_004586_060 Hb_007062_040 Hb_007062_040 Hb_000236_490--Hb_007062_040 Hb_004096_160 Hb_004096_160 Hb_000236_490--Hb_004096_160 Hb_000513_090 Hb_000513_090 Hb_000236_490--Hb_000513_090 Hb_002909_040 Hb_002909_040 Hb_000236_490--Hb_002909_040 Hb_001366_090 Hb_001366_090 Hb_000236_490--Hb_001366_090 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_000046_570 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_007062_040--Hb_005460_050 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000513_090--Hb_002909_040 Hb_000513_090--Hb_004586_060 Hb_002014_010 Hb_002014_010 Hb_000513_090--Hb_002014_010 Hb_000139_320 Hb_000139_320 Hb_000513_090--Hb_000139_320 Hb_000340_030 Hb_000340_030 Hb_000513_090--Hb_000340_030 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_002909_040--Hb_000089_210 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_006573_040 Hb_006573_040 Hb_001366_090--Hb_006573_040 Hb_002232_480 Hb_002232_480 Hb_001366_090--Hb_002232_480 Hb_004994_240 Hb_004994_240 Hb_001366_090--Hb_004994_240 Hb_001366_090--Hb_004586_060 Hb_001366_090--Hb_000046_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1868 17.3028 25.9607 20.8077 12.9882 15.7691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.90057 11.3051 7.46551 15.7128 8.53041

CAGE analysis