Hb_161568_010

Information

Type -
Description -
Location Contig161568: 5224-6612
Sequence    

Annotation

kegg
ID rcu:RCOM_0554200
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002525141.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q9M2K6
description PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2
trembl
ID B9SGM2
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0554200 PE=4 SV=1
Gene Ontology
ID GO:0009506
description plasmodesmata callose-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14475: 5371-6656
cDNA
(Sanger)
(ID:Location)		 050_L19.ab1: 5374-6656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161568_010 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_004096_160 0.0710802485 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
3 Hb_004228_120 0.0817244633 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
4 Hb_005649_100 0.0829108414 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_000958_080 0.0843956135 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000703_160 0.0873834551 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
7 Hb_000497_190 0.0892875745 - - sterol isomerase, putative [Ricinus communis]
8 Hb_010381_010 0.0896327021 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_023313_040 0.0911630898 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
10 Hb_025668_010 0.0917675807 - - unnamed protein product [Coffea canephora]
11 Hb_003449_100 0.0921284228 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
12 Hb_002326_110 0.0921698561 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
13 Hb_005730_010 0.0925446418 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
14 Hb_003119_090 0.0958270371 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
15 Hb_016347_020 0.0975112193 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
16 Hb_002909_040 0.0981246557 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
17 Hb_000089_210 0.0982633926 - - unknown [Medicago truncatula]
18 Hb_000836_300 0.0985073381 - - caax prenyl protease ste24, putative [Ricinus communis]
19 Hb_005144_210 0.0996274496 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002687_180 0.1000551871 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_161568_010 Hb_161568_010 Hb_004096_160 Hb_004096_160 Hb_161568_010--Hb_004096_160 Hb_004228_120 Hb_004228_120 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_000958_080 Hb_000958_080 Hb_161568_010--Hb_000958_080 Hb_000703_160 Hb_000703_160 Hb_161568_010--Hb_000703_160 Hb_000497_190 Hb_000497_190 Hb_161568_010--Hb_000497_190 Hb_004096_160--Hb_000958_080 Hb_002909_040 Hb_002909_040 Hb_004096_160--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_001279_190 Hb_001279_190 Hb_004228_120--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_004228_120--Hb_002687_180 Hb_002552_040 Hb_002552_040 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_002326_110 Hb_002326_110 Hb_005649_100--Hb_002326_110 Hb_005649_100--Hb_002909_040 Hb_000940_050 Hb_000940_050 Hb_005649_100--Hb_000940_050 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_003228_100 Hb_003228_100 Hb_005649_100--Hb_003228_100 Hb_000012_270 Hb_000012_270 Hb_005649_100--Hb_000012_270 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000958_080--Hb_000089_210 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_003449_100 Hb_003449_100 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_007919_110 Hb_007919_110 Hb_000703_160--Hb_007919_110 Hb_005144_210 Hb_005144_210 Hb_000703_160--Hb_005144_210 Hb_000703_160--Hb_000958_080 Hb_004724_390 Hb_004724_390 Hb_000497_190--Hb_004724_390 Hb_000261_210 Hb_000261_210 Hb_000497_190--Hb_000261_210 Hb_000154_050 Hb_000154_050 Hb_000497_190--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_000497_190--Hb_001450_020 Hb_000497_190--Hb_005730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67787 3.91531 9.02499 6.84133 3.87543 2.85687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89455 1.96613 2.9922 4.01608 2.48855

CAGE analysis