Hb_005730_010

Information

Type -
Description -
Location Contig5730: 20401-28173
Sequence    

Annotation

kegg
ID rcu:RCOM_0004440
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_011008463.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
swissprot
ID Q84WC6
description Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1
trembl
ID A0A067L0R2
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_24802 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_010 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
2 Hb_023313_040 0.0743178943 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
3 Hb_025668_010 0.0744312142 - - unnamed protein product [Coffea canephora]
4 Hb_000958_080 0.0758809519 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004096_160 0.0760830893 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
6 Hb_000702_090 0.0764972819 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_007413_040 0.0768919157 - - myo inositol monophosphatase, putative [Ricinus communis]
8 Hb_000954_010 0.0800381465 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
9 Hb_001931_030 0.0810830976 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
10 Hb_000513_090 0.0817589592 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
11 Hb_002942_210 0.0822681865 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
12 Hb_000836_300 0.084136048 - - caax prenyl protease ste24, putative [Ricinus communis]
13 Hb_002909_040 0.0845989254 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
14 Hb_000994_020 0.0869633876 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_000963_040 0.0886475403 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
16 Hb_000803_270 0.0887916928 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
17 Hb_027654_020 0.0920818672 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
18 Hb_161568_010 0.0925446418 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_005322_050 0.0927811279 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
20 Hb_086063_020 0.0947244235 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005730_010 Hb_005730_010 Hb_023313_040 Hb_023313_040 Hb_005730_010--Hb_023313_040 Hb_025668_010 Hb_025668_010 Hb_005730_010--Hb_025668_010 Hb_000958_080 Hb_000958_080 Hb_005730_010--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_007413_040 Hb_007413_040 Hb_005730_010--Hb_007413_040 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_002942_210 Hb_002942_210 Hb_025668_010--Hb_002942_210 Hb_000261_210 Hb_000261_210 Hb_025668_010--Hb_000261_210 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_004096_160--Hb_002909_040 Hb_004096_160--Hb_009449_060 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_007413_040--Hb_000019_190 Hb_007413_040--Hb_023313_040 Hb_007413_040--Hb_004096_160 Hb_007413_040--Hb_000236_490 Hb_001931_030 Hb_001931_030 Hb_007413_040--Hb_001931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19788 5.14432 7.86201 7.36697 5.51946 3.2156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63547 2.69933 1.99973 5.76817 3.36176

CAGE analysis