Hb_000006_010

Information

Type -
Description -
Location Contig6: 7177-12157
Sequence    

Annotation

kegg
ID rcu:RCOM_0229930
description hypothetical protein
nr
ID XP_002534376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67YS6
description Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1
trembl
ID B9T807
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0229930 PE=4 SV=1
Gene Ontology
ID GO:0016020
description ala-interacting subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50532: 7234-12049 , PASA_asmbl_50533: 7279-9349 , PASA_asmbl_50534: 7348-7582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000006_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001009_320 0.0437123884 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
3 Hb_000139_260 0.0604753643 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
4 Hb_023313_040 0.0651274643 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
5 Hb_000803_270 0.0661603048 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
6 Hb_000522_170 0.0673419451 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
7 Hb_000336_210 0.0680301041 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
8 Hb_002326_040 0.0693415727 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
9 Hb_007007_040 0.073237255 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
10 Hb_021419_030 0.0748678203 - - hypothetical protein glysoja_023295 [Glycine soja]
11 Hb_001189_090 0.0799785886 - - carbon catabolite repressor protein, putative [Ricinus communis]
12 Hb_015807_050 0.0809627743 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
13 Hb_000477_050 0.0811726935 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
14 Hb_033286_010 0.0812301637 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
15 Hb_002301_300 0.0842989953 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
16 Hb_000120_280 0.0845993046 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_000258_070 0.0849376266 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
18 Hb_002849_130 0.0851952051 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
19 Hb_000567_070 0.0852968552 - - autophagy protein, putative [Ricinus communis]
20 Hb_000019_190 0.0857424783 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]

Gene co-expression network

sample Hb_000006_010 Hb_000006_010 Hb_001009_320 Hb_001009_320 Hb_000006_010--Hb_001009_320 Hb_000139_260 Hb_000139_260 Hb_000006_010--Hb_000139_260 Hb_023313_040 Hb_023313_040 Hb_000006_010--Hb_023313_040 Hb_000803_270 Hb_000803_270 Hb_000006_010--Hb_000803_270 Hb_000522_170 Hb_000522_170 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210 Hb_000477_050 Hb_000477_050 Hb_001009_320--Hb_000477_050 Hb_001009_320--Hb_000522_170 Hb_000120_280 Hb_000120_280 Hb_001009_320--Hb_000120_280 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220 Hb_002014_040 Hb_002014_040 Hb_000139_260--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000139_260--Hb_001005_030 Hb_004912_030 Hb_004912_030 Hb_000139_260--Hb_004912_030 Hb_139002_010 Hb_139002_010 Hb_000139_260--Hb_139002_010 Hb_010272_010 Hb_010272_010 Hb_000139_260--Hb_010272_010 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_023313_040--Hb_000803_270 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000803_270--Hb_000702_090 Hb_183510_020 Hb_183510_020 Hb_000803_270--Hb_183510_020 Hb_000317_470 Hb_000317_470 Hb_000522_170--Hb_000317_470 Hb_001221_080 Hb_001221_080 Hb_000522_170--Hb_001221_080 Hb_021419_030 Hb_021419_030 Hb_000522_170--Hb_021419_030 Hb_000522_170--Hb_000139_260 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_002272_050 Hb_002272_050 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70551 9.60543 15.8694 15.5609 16.0189 9.7186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72506 10.3885 8.37632 11.1558 11.0064

CAGE analysis