Hb_010272_010

Information

Type -
Description -
Location Contig10272: 16001-30412
Sequence    

Annotation

kegg
ID tcc:TCM_001900
description Endoplasmic reticulum vesicle transporter protein isoform 1
nr
ID XP_012081271.1
description PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
swissprot
ID Q803I2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
trembl
ID A0A067KE42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18119 PE=4 SV=1
Gene Ontology
ID GO:0005783
description endoplasmic reticulum-golgi intermediate compartment protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01131: 16014-30329 , PASA_asmbl_01132: 16036-16536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010272_010 0.0 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
2 Hb_005946_210 0.0500131874 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
3 Hb_012215_010 0.054223013 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
4 Hb_002539_110 0.0581294822 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
5 Hb_000640_070 0.0591653206 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
6 Hb_000664_110 0.059523049 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
7 Hb_002014_040 0.060884774 - - site-1 protease, putative [Ricinus communis]
8 Hb_000362_170 0.0631318589 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_000007_280 0.0718699847 - - hypothetical protein VITISV_000066 [Vitis vinifera]
10 Hb_162275_040 0.0721172671 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001005_030 0.0736960305 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
12 Hb_008226_090 0.0739114645 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
13 Hb_003436_020 0.07434909 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
14 Hb_003104_040 0.0750830031 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
15 Hb_000139_260 0.0752293977 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
16 Hb_007800_020 0.0756718656 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
17 Hb_073973_150 0.0759748569 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
18 Hb_000737_030 0.0800239488 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
19 Hb_005895_010 0.081380677 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
20 Hb_017295_010 0.0820748954 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]

Gene co-expression network

sample Hb_010272_010 Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_005946_210--Hb_000664_110 Hb_001109_060 Hb_001109_060 Hb_005946_210--Hb_001109_060 Hb_008226_090 Hb_008226_090 Hb_005946_210--Hb_008226_090 Hb_005946_210--Hb_012215_010 Hb_005946_210--Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_008397_010 Hb_008397_010 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_000664_110--Hb_000640_070 Hb_000664_110--Hb_001109_060 Hb_000664_110--Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_002014_040--Hb_008226_090 Hb_002014_040--Hb_005895_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0945 30.0826 35.4618 42.3736 46.4319 37.5511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0774 15.1545 16.391 27.2467 31.5167

CAGE analysis