Hb_001931_030

Information

Type -
Description -
Location Contig1931: 97017-113466
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20620g
description chaperonin family protein
nr
ID XP_010266878.1
description PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
swissprot
ID Q9SF16
description T-complex protein 1 subunit eta OS=Arabidopsis thaliana GN=CCT7 PE=1 SV=1
trembl
ID U5GGG4
description Chaperonin family protein OS=Populus trichocarpa GN=POPTR_0004s20620g PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit eta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19291: 96798-113803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001931_030 0.0 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
2 Hb_007413_040 0.0771839929 - - myo inositol monophosphatase, putative [Ricinus communis]
3 Hb_002942_210 0.0779086869 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
4 Hb_005730_010 0.0810830976 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
5 Hb_025668_010 0.0811318521 - - unnamed protein product [Coffea canephora]
6 Hb_000803_270 0.0812998585 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
7 Hb_000847_080 0.0828140519 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
8 Hb_033642_040 0.0843951985 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
9 Hb_016777_040 0.0868696175 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
10 Hb_003913_020 0.0881507877 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
11 Hb_029695_080 0.0899739958 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
12 Hb_000954_010 0.092471247 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
13 Hb_004096_060 0.0930688065 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
14 Hb_023313_040 0.0943694331 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
15 Hb_000661_120 0.09469133 - - cap binding protein, putative [Ricinus communis]
16 Hb_000702_090 0.0961820336 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
17 Hb_021943_080 0.0963453722 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
18 Hb_077026_010 0.0968912615 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
19 Hb_000085_170 0.0979369733 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
20 Hb_002014_040 0.0997893049 - - site-1 protease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001931_030 Hb_001931_030 Hb_007413_040 Hb_007413_040 Hb_001931_030--Hb_007413_040 Hb_002942_210 Hb_002942_210 Hb_001931_030--Hb_002942_210 Hb_005730_010 Hb_005730_010 Hb_001931_030--Hb_005730_010 Hb_025668_010 Hb_025668_010 Hb_001931_030--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_001931_030--Hb_000803_270 Hb_000847_080 Hb_000847_080 Hb_001931_030--Hb_000847_080 Hb_000019_190 Hb_000019_190 Hb_007413_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007413_040--Hb_023313_040 Hb_004096_160 Hb_004096_160 Hb_007413_040--Hb_004096_160 Hb_007413_040--Hb_005730_010 Hb_000236_490 Hb_000236_490 Hb_007413_040--Hb_000236_490 Hb_002014_040 Hb_002014_040 Hb_002942_210--Hb_002014_040 Hb_139002_010 Hb_139002_010 Hb_002942_210--Hb_139002_010 Hb_008921_010 Hb_008921_010 Hb_002942_210--Hb_008921_010 Hb_002942_210--Hb_025668_010 Hb_002942_210--Hb_000847_080 Hb_005730_010--Hb_023313_040 Hb_005730_010--Hb_025668_010 Hb_000958_080 Hb_000958_080 Hb_005730_010--Hb_000958_080 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_025668_010--Hb_023313_040 Hb_001002_060 Hb_001002_060 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_000261_210 Hb_000261_210 Hb_025668_010--Hb_000261_210 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_000803_270--Hb_023313_040 Hb_000006_010 Hb_000006_010 Hb_000803_270--Hb_000006_010 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000803_270--Hb_000702_090 Hb_183510_020 Hb_183510_020 Hb_000803_270--Hb_183510_020 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_000847_080--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9345 25.8855 47.0974 33.0228 30.1137 19.7632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3458 14.4214 7.9106 29.8447 27.7087

CAGE analysis