Hb_009449_060

Information

Type -
Description -
Location Contig9449: 20447-30849
Sequence    

Annotation

kegg
ID tcc:TCM_010311
description UB-like protease 1D
nr
ID XP_012085362.1
description PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
swissprot
ID Q2PS26
description Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1
trembl
ID A0A067JUQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17731 PE=4 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin-like-specific protease 1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63243: 20467-23870 , PASA_asmbl_63244: 24349-27050 , PASA_asmbl_63245: 25861-26380 , PASA_asmbl_63246: 27068-30795 , PASA_asmbl_63247: 27074-30573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009449_060 0.0 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
2 Hb_004096_160 0.0640046986 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
3 Hb_002909_040 0.0655947659 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
4 Hb_172257_010 0.0678760039 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
5 Hb_000958_080 0.0681605594 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_450 0.0761342197 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_007163_060 0.0765400855 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
8 Hb_000207_200 0.0785459111 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
9 Hb_000236_490 0.0790714579 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
10 Hb_005322_050 0.079204294 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
11 Hb_001005_020 0.0793717257 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
12 Hb_000089_210 0.0860877785 - - unknown [Medicago truncatula]
13 Hb_000260_770 0.08670003 - - er lumen protein retaining receptor, putative [Ricinus communis]
14 Hb_000048_080 0.0878451124 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
15 Hb_003470_040 0.0883843944 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
16 Hb_000300_550 0.0895316017 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000139_220 0.0905675301 - - leucine rich repeat-containing protein, putative [Ricinus communis]
18 Hb_000205_130 0.0905717006 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_000102_050 0.0915594619 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_000352_350 0.0958564562 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009449_060 Hb_009449_060 Hb_004096_160 Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_002909_040 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_007163_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_000958_080--Hb_005322_050 Hb_000958_080--Hb_000089_210 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_000809_160 Hb_000809_160 Hb_000866_450--Hb_000809_160 Hb_005288_140 Hb_005288_140 Hb_000866_450--Hb_005288_140 Hb_000094_090 Hb_000094_090 Hb_000866_450--Hb_000094_090 Hb_102438_030 Hb_102438_030 Hb_000866_450--Hb_102438_030 Hb_001245_050 Hb_001245_050 Hb_000866_450--Hb_001245_050 Hb_000723_110 Hb_000723_110 Hb_000866_450--Hb_000723_110 Hb_007163_060--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_007163_060--Hb_000300_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76182 10.5956 15.7987 8.83941 6.6799 5.94261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56934 4.8214 2.96761 5.89733 4.16831

CAGE analysis