Hb_172257_010

Information

Type transcription factor
Description TF Family: HMG
Location Contig172257: 19737-24449
Sequence    

Annotation

kegg
ID pop:POPTR_0011s17180g
description high mobility group family protein
nr
ID XP_006378007.1
description high mobility group family protein [Populus trichocarpa]
swissprot
ID Q9LTT3
description High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1
trembl
ID B9N5K1
description High mobility group family protein OS=Populus trichocarpa GN=POPTR_0011s17180g PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 10 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16252: 19977-24261 , PASA_asmbl_16253: 21951-22307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172257_010 0.0 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
2 Hb_005322_050 0.0576192881 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
3 Hb_000300_550 0.0621744396 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_152910_010 0.0666573171 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
5 Hb_007163_060 0.0670115656 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
6 Hb_009449_060 0.0678760039 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
7 Hb_000302_170 0.0758117675 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_102438_030 0.0847968922 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_000958_080 0.0855233721 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000994_020 0.0857608697 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
11 Hb_000640_190 0.0858590654 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
12 Hb_010287_030 0.0860243398 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000866_450 0.0863799609 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000102_050 0.0865303809 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
15 Hb_030545_030 0.0873857086 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
16 Hb_006022_010 0.089736729 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
17 Hb_004223_110 0.0914674967 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
18 Hb_006573_160 0.0929091658 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
19 Hb_000139_220 0.094284093 - - leucine rich repeat-containing protein, putative [Ricinus communis]
20 Hb_004096_160 0.0956681732 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]

Gene co-expression network

sample Hb_172257_010 Hb_172257_010 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_007163_060 Hb_007163_060 Hb_172257_010--Hb_007163_060 Hb_009449_060 Hb_009449_060 Hb_172257_010--Hb_009449_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_005322_050--Hb_000300_550 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_000300_550--Hb_027654_020 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_152910_010--Hb_000302_170 Hb_152910_010--Hb_000300_550 Hb_152910_010--Hb_000640_190 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_007163_060--Hb_000300_550 Hb_007163_060--Hb_009449_060 Hb_004096_160 Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.57095 14.2254 18.7145 11.5366 9.52628 7.48483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0539 3.70041 2.69296 6.64655 6.2429

CAGE analysis