Hb_004223_110

Information

Type -
Description -
Location Contig4223: 54266-57971
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02510g
description POPTRDRAFT_816022; abscisic acid-responsive HVA22 family protein
nr
ID XP_011028996.1
description PREDICTED: putative HVA22-like protein g [Populus euphratica]
swissprot
ID Q8LE10
description HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2
trembl
ID A0A0B0MB22
description HVA22-like protein OS=Gossypium arboreum GN=F383_10894 PE=3 SV=1
Gene Ontology
ID GO:0016020
description hva22-like protein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41757: 54209-57787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_110 0.0 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
2 Hb_007163_060 0.0675392299 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
3 Hb_000608_350 0.0873353969 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
4 Hb_008921_010 0.0909285682 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
5 Hb_172257_010 0.0914674967 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
6 Hb_000589_190 0.0943686007 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
7 Hb_005322_050 0.0944249636 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
8 Hb_003746_030 0.0947909744 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
9 Hb_000300_550 0.0981132466 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_001277_360 0.1013493133 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
11 Hb_020141_040 0.106856691 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
12 Hb_002942_210 0.1074078702 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
13 Hb_000453_040 0.109980801 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
14 Hb_000139_220 0.1124292341 - - leucine rich repeat-containing protein, putative [Ricinus communis]
15 Hb_001051_090 0.1128032235 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
16 Hb_044155_010 0.1142565366 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
17 Hb_002291_060 0.1149035635 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
18 Hb_007800_020 0.1160857563 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
19 Hb_001623_110 0.1171918729 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
20 Hb_000302_170 0.1172948371 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004223_110 Hb_004223_110 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_172257_010 Hb_172257_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050 Hb_007163_060--Hb_005322_050 Hb_007163_060--Hb_172257_010 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_000608_350--Hb_007163_060 Hb_000608_350--Hb_005322_050 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_002054_050 Hb_002054_050 Hb_008921_010--Hb_002054_050 Hb_000959_230 Hb_000959_230 Hb_008921_010--Hb_000959_230 Hb_002942_210 Hb_002942_210 Hb_008921_010--Hb_002942_210 Hb_008921_010--Hb_000589_190 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010 Hb_172257_010--Hb_005322_050 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_009449_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_020141_040 Hb_020141_040 Hb_000589_190--Hb_020141_040 Hb_000317_510 Hb_000317_510 Hb_000589_190--Hb_000317_510 Hb_103747_020 Hb_103747_020 Hb_000589_190--Hb_103747_020 Hb_000994_020 Hb_000994_020 Hb_000589_190--Hb_000994_020 Hb_000589_190--Hb_002942_210 Hb_005322_050--Hb_000300_550 Hb_005322_050--Hb_000302_170 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5131 26.1554 42.706 29.9673 34.5983 16.4862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9398 8.00947 7.65963 11.1428 12.582

CAGE analysis