Hb_000637_140

Information

Type -
Description -
Location Contig637: 180954-200018
Sequence    

Annotation

kegg
ID rcu:RCOM_1617380
description protein binding protein, putative
nr
ID XP_012092989.1
description PREDICTED: actin-related protein 4-like [Jatropha curcas]
swissprot
ID Q84M92
description Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1
trembl
ID A0A067J8R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05871 PE=3 SV=1
Gene Ontology
ID GO:0000812
description actin-related protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_140 0.0 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
2 Hb_000608_350 0.0766587661 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
3 Hb_007800_020 0.0924602255 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
4 Hb_162060_010 0.0954487303 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008226_090 0.0989999121 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
6 Hb_000034_080 0.0998837452 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
7 Hb_003038_120 0.1006090794 - - rer1 protein, putative [Ricinus communis]
8 Hb_000635_040 0.1011045713 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
9 Hb_001349_030 0.1019591084 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
10 Hb_000664_110 0.102118352 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
11 Hb_003897_040 0.102953189 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
12 Hb_000608_110 0.1055530089 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
13 Hb_000933_010 0.1063280425 - - -
14 Hb_000205_130 0.1067585208 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_010053_040 0.1070809688 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
16 Hb_000494_080 0.1071435044 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
17 Hb_005895_010 0.1116447516 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
18 Hb_000059_200 0.1126302954 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
19 Hb_007163_060 0.1126834448 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
20 Hb_000760_020 0.1130292894 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000637_140 Hb_000637_140 Hb_000608_350 Hb_000608_350 Hb_000637_140--Hb_000608_350 Hb_007800_020 Hb_007800_020 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_003038_120 Hb_003038_120 Hb_000637_140--Hb_003038_120 Hb_000608_350--Hb_007800_020 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_007800_020--Hb_000362_170 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_000322_070 Hb_000322_070 Hb_162060_010--Hb_000322_070 Hb_146081_010 Hb_146081_010 Hb_162060_010--Hb_146081_010 Hb_162060_010--Hb_000635_040 Hb_000096_120 Hb_000096_120 Hb_162060_010--Hb_000096_120 Hb_162060_010--Hb_008226_090 Hb_000009_400 Hb_000009_400 Hb_162060_010--Hb_000009_400 Hb_008226_090--Hb_005723_020 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_000034_080--Hb_003038_120 Hb_003897_040 Hb_003897_040 Hb_000034_080--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000034_080--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_000034_080--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_000034_080--Hb_007062_040 Hb_007413_040 Hb_007413_040 Hb_000034_080--Hb_007413_040 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003038_120--Hb_003897_040 Hb_003038_120--Hb_032990_010 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61764 8.84855 11.6808 13.583 9.48798 11.811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81629 3.43073 2.61564 4.19039 4.95428

CAGE analysis