Hb_000608_350

Information

Type -
Description -
Location Contig608: 196313-200946
Sequence    

Annotation

kegg
ID rcu:RCOM_1077700
description hypothetical protein
nr
ID XP_012085789.1
description PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
swissprot
ID A5D8P8
description ER membrane protein complex subunit 10 OS=Xenopus laevis GN=emc10 PE=2 SV=1
trembl
ID A0A067K3Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18048 PE=4 SV=1
Gene Ontology
ID GO:0005774
description er membrane protein complex subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50858: 196361-200915 , PASA_asmbl_50859: 197665-197936
cDNA
(Sanger)
(ID:Location)		 015_A12.ab1: 196406-200422 , 023_N23.ab1: 196406-197588 , 044_L24.ab1: 196396-200429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_350 0.0 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
2 Hb_007800_020 0.0687401598 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
3 Hb_000637_140 0.0766587661 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
4 Hb_007163_060 0.0817200212 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
5 Hb_005322_050 0.0855744245 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
6 Hb_004223_110 0.0873353969 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
7 Hb_005723_020 0.088231471 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008921_010 0.0931171198 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
9 Hb_002054_050 0.0945403431 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
10 Hb_000640_070 0.0955633092 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
11 Hb_000635_040 0.0966808517 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_010272_010 0.0970162533 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
13 Hb_000300_550 0.0974270054 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_002942_210 0.0975248424 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
15 Hb_008226_090 0.0975810399 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
16 Hb_162060_010 0.0980563984 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001405_190 0.0982206486 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
18 Hb_005895_010 0.0988664302 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
19 Hb_001301_220 0.0995443307 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
20 Hb_000362_170 0.0996335194 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_350 Hb_000608_350 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_007800_020--Hb_000362_170 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_003038_120 Hb_003038_120 Hb_000637_140--Hb_003038_120 Hb_007163_060--Hb_005322_050 Hb_172257_010 Hb_172257_010 Hb_007163_060--Hb_172257_010 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_004223_110--Hb_005322_050 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.3896 75.8781 126.687 112.642 101.72 88.4723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0998 33.3835 27.8526 53.9497 46.3859

CAGE analysis