Hb_162060_010

Information

Type -
Description -
Location Contig162060: 1653-2144
Sequence    

Annotation

kegg
ID rcu:RCOM_0772420
description hypothetical protein
nr
ID XP_002533555.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54RZ2
description Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2
trembl
ID B9T5N6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0772420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein yipf6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_H10.ab1: 1660-2259

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162060_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000322_070 0.0784861909 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
3 Hb_146081_010 0.08637873 - - PREDICTED: protein SCAI [Jatropha curcas]
4 Hb_000635_040 0.0874831364 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
5 Hb_000096_120 0.0890678975 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
6 Hb_008226_090 0.093521538 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
7 Hb_000009_400 0.0941216943 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
8 Hb_000637_140 0.0954487303 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_007800_020 0.095951895 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
10 Hb_033286_010 0.0968452562 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
11 Hb_003038_120 0.0980432411 - - rer1 protein, putative [Ricinus communis]
12 Hb_000608_350 0.0980563984 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
13 Hb_000692_150 0.0989078874 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
14 Hb_000879_180 0.0992200833 - - XPA-binding protein, putative [Ricinus communis]
15 Hb_000046_570 0.0994633629 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
16 Hb_005460_050 0.1008184299 - - COR413-PM2, putative [Ricinus communis]
17 Hb_005946_210 0.1014514793 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
18 Hb_000103_310 0.1023595413 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
19 Hb_001405_210 0.1028622608 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_001227_130 0.1030241293 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_162060_010 Hb_162060_010 Hb_000322_070 Hb_000322_070 Hb_162060_010--Hb_000322_070 Hb_146081_010 Hb_146081_010 Hb_162060_010--Hb_146081_010 Hb_000635_040 Hb_000635_040 Hb_162060_010--Hb_000635_040 Hb_000096_120 Hb_000096_120 Hb_162060_010--Hb_000096_120 Hb_008226_090 Hb_008226_090 Hb_162060_010--Hb_008226_090 Hb_000009_400 Hb_000009_400 Hb_162060_010--Hb_000009_400 Hb_000322_070--Hb_000009_400 Hb_000046_570 Hb_000046_570 Hb_000322_070--Hb_000046_570 Hb_003617_020 Hb_003617_020 Hb_000322_070--Hb_003617_020 Hb_008253_020 Hb_008253_020 Hb_000322_070--Hb_008253_020 Hb_000390_250 Hb_000390_250 Hb_000322_070--Hb_000390_250 Hb_146081_010--Hb_000322_070 Hb_030736_070 Hb_030736_070 Hb_146081_010--Hb_030736_070 Hb_001114_110 Hb_001114_110 Hb_146081_010--Hb_001114_110 Hb_000116_150 Hb_000116_150 Hb_146081_010--Hb_000116_150 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000130_420 Hb_000130_420 Hb_000635_040--Hb_000130_420 Hb_000635_040--Hb_000046_570 Hb_000362_170 Hb_000362_170 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_000635_040--Hb_008226_090 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_004096_180 Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_006588_070 Hb_006588_070 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000096_120--Hb_000046_570 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000009_400--Hb_000046_570 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2719 29.6419 36.4323 51.2615 31.4506 31.627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3699 19.5988 16.2712 18.6645 13.3115

CAGE analysis