Hb_000116_150

Information

Type -
Description -
Location Contig116: 131792-135477
Sequence    

Annotation

kegg
ID rcu:RCOM_0873990
description serine/threonine-protein kinase cx32, putative (EC:2.7.10.2)
nr
ID XP_002521714.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P27450
description Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2
trembl
ID B9S6U5
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_0873990 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable serine threonine-protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04820: 131650-135448 , PASA_asmbl_04821: 131650-134341 , PASA_asmbl_04822: 133324-133610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_150 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_009247_010 0.0880774132 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
3 Hb_146081_010 0.1035077129 - - PREDICTED: protein SCAI [Jatropha curcas]
4 Hb_000890_030 0.1043193335 - - plastid CUL1 [Hevea brasiliensis]
5 Hb_000390_250 0.105327564 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
6 Hb_091675_010 0.1123269335 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
7 Hb_000098_050 0.1131685942 - - BnaCnng11900D [Brassica napus]
8 Hb_002874_090 0.1138414852 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
9 Hb_005381_020 0.1150774959 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
10 Hb_121089_030 0.1213501186 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
11 Hb_010042_030 0.1240235554 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
12 Hb_000322_070 0.124236578 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
13 Hb_000580_030 0.1244407268 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
14 Hb_000046_570 0.1246782242 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
15 Hb_162060_010 0.1249044447 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007286_020 0.1255086089 - - hypothetical protein L484_010675 [Morus notabilis]
17 Hb_001114_110 0.1259656698 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_159809_030 0.1262442123 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
19 Hb_000059_200 0.1266442427 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
20 Hb_000017_230 0.1267048006 - - hypothetical protein JCGZ_20558 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_150 Hb_000116_150 Hb_009247_010 Hb_009247_010 Hb_000116_150--Hb_009247_010 Hb_146081_010 Hb_146081_010 Hb_000116_150--Hb_146081_010 Hb_000890_030 Hb_000890_030 Hb_000116_150--Hb_000890_030 Hb_000390_250 Hb_000390_250 Hb_000116_150--Hb_000390_250 Hb_091675_010 Hb_091675_010 Hb_000116_150--Hb_091675_010 Hb_000098_050 Hb_000098_050 Hb_000116_150--Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070 Hb_000322_070 Hb_000322_070 Hb_146081_010--Hb_000322_070 Hb_162060_010 Hb_162060_010 Hb_146081_010--Hb_162060_010 Hb_030736_070 Hb_030736_070 Hb_146081_010--Hb_030736_070 Hb_001114_110 Hb_001114_110 Hb_146081_010--Hb_001114_110 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000046_570 Hb_000046_570 Hb_000390_250--Hb_000046_570 Hb_000329_230 Hb_000329_230 Hb_000390_250--Hb_000329_230 Hb_001863_360 Hb_001863_360 Hb_000390_250--Hb_001863_360 Hb_005381_020 Hb_005381_020 Hb_000390_250--Hb_005381_020 Hb_003929_170 Hb_003929_170 Hb_000390_250--Hb_003929_170 Hb_001366_090 Hb_001366_090 Hb_000390_250--Hb_001366_090 Hb_001493_080 Hb_001493_080 Hb_091675_010--Hb_001493_080 Hb_091675_010--Hb_009247_010 Hb_068575_010 Hb_068575_010 Hb_091675_010--Hb_068575_010 Hb_091675_010--Hb_000098_050 Hb_000059_200 Hb_000059_200 Hb_091675_010--Hb_000059_200 Hb_000320_290 Hb_000320_290 Hb_000098_050--Hb_000320_290 Hb_000098_050--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_000098_050--Hb_000085_260 Hb_000098_050--Hb_044486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3294 17.7198 17.2607 27.1036 6.64977 19.2116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83934 5.04176 7.83667 10.2692 7.21034

CAGE analysis