Hb_001493_080

Information

Type -
Description -
Location Contig1493: 63362-64192
Sequence    

Annotation

kegg
ID rcu:RCOM_0333360
description RING-H2 finger protein ATL1M, putative
nr
ID XP_012068786.1
description PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
swissprot
ID Q9XF63
description RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1
trembl
ID A0A067KWT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24621 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12433: 63528-64314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_080 0.0 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
2 Hb_091675_010 0.1145758308 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
3 Hb_000059_200 0.1173287633 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
4 Hb_000608_260 0.1213184737 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
5 Hb_001489_100 0.1314875059 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
6 Hb_000116_150 0.1329428487 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_003430_060 0.1337267432 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
8 Hb_000991_040 0.1346129299 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
9 Hb_003078_020 0.1366434189 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
10 Hb_073171_090 0.1397918584 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
11 Hb_002081_120 0.140136971 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
12 Hb_000931_020 0.1427472134 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
13 Hb_008937_010 0.1442184824 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
14 Hb_000260_600 0.1442239374 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000197_030 0.1451106868 - - hypothetical protein RCOM_1447500 [Ricinus communis]
16 Hb_131035_010 0.1454851825 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006198_020 0.1458068029 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
18 Hb_001638_300 0.1467991424 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
19 Hb_000580_030 0.1468452182 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_009247_010 0.1508050098 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_080 Hb_001493_080 Hb_091675_010 Hb_091675_010 Hb_001493_080--Hb_091675_010 Hb_000059_200 Hb_000059_200 Hb_001493_080--Hb_000059_200 Hb_000608_260 Hb_000608_260 Hb_001493_080--Hb_000608_260 Hb_001489_100 Hb_001489_100 Hb_001493_080--Hb_001489_100 Hb_000116_150 Hb_000116_150 Hb_001493_080--Hb_000116_150 Hb_003430_060 Hb_003430_060 Hb_001493_080--Hb_003430_060 Hb_091675_010--Hb_000116_150 Hb_009247_010 Hb_009247_010 Hb_091675_010--Hb_009247_010 Hb_068575_010 Hb_068575_010 Hb_091675_010--Hb_068575_010 Hb_000098_050 Hb_000098_050 Hb_091675_010--Hb_000098_050 Hb_091675_010--Hb_000059_200 Hb_073171_090 Hb_073171_090 Hb_000059_200--Hb_073171_090 Hb_002081_120 Hb_002081_120 Hb_000059_200--Hb_002081_120 Hb_096819_010 Hb_096819_010 Hb_000059_200--Hb_096819_010 Hb_000958_150 Hb_000958_150 Hb_000059_200--Hb_000958_150 Hb_003470_030 Hb_003470_030 Hb_000059_200--Hb_003470_030 Hb_000205_130 Hb_000205_130 Hb_000059_200--Hb_000205_130 Hb_116420_040 Hb_116420_040 Hb_000608_260--Hb_116420_040 Hb_000365_330 Hb_000365_330 Hb_000608_260--Hb_000365_330 Hb_001638_300 Hb_001638_300 Hb_000608_260--Hb_001638_300 Hb_000664_110 Hb_000664_110 Hb_000608_260--Hb_000664_110 Hb_000260_600 Hb_000260_600 Hb_000608_260--Hb_000260_600 Hb_000069_480 Hb_000069_480 Hb_000608_260--Hb_000069_480 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_000116_150--Hb_009247_010 Hb_146081_010 Hb_146081_010 Hb_000116_150--Hb_146081_010 Hb_000890_030 Hb_000890_030 Hb_000116_150--Hb_000890_030 Hb_000390_250 Hb_000390_250 Hb_000116_150--Hb_000390_250 Hb_000116_150--Hb_000098_050 Hb_007508_080 Hb_007508_080 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_010697_040 Hb_010697_040 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76287 5.79686 2.71472 6.84294 2.61062 4.22287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47628 0.504719 2.38182 1.73426 1.32198

CAGE analysis