Hb_001638_300

Information

Type -
Description -
Location Contig1638: 221564-225192
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18030g
description POPTRDRAFT_644658; hypothetical protein
nr
ID XP_012083101.1
description PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
swissprot
ID Q8L838
description Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1
trembl
ID A0A067JX05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14183 PE=4 SV=1
Gene Ontology
ID GO:0000145
description conserved oligomeric golgi complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15033: 221597-225101
cDNA
(Sanger)
(ID:Location)		 014_I01r.ab1: 226090-226917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_300 0.0 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
2 Hb_132840_100 0.0676615544 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
3 Hb_000365_330 0.0783341147 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004129_070 0.0784644189 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
5 Hb_032920_130 0.0827076759 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
6 Hb_147505_010 0.0829782277 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
7 Hb_001033_050 0.0831550514 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
8 Hb_000028_510 0.0863477774 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
9 Hb_000035_410 0.0864911399 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
10 Hb_006615_120 0.0880854577 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
11 Hb_004629_010 0.0895215588 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
12 Hb_000949_020 0.0903864424 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
13 Hb_000176_130 0.0907527388 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
14 Hb_008253_020 0.090859397 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
15 Hb_005946_210 0.0930435721 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
16 Hb_010407_060 0.093415562 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
17 Hb_001489_100 0.0942539531 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
18 Hb_000120_660 0.094468305 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_004429_010 0.0948034009 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_009112_010 0.0951365434 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_001638_300 Hb_001638_300 Hb_132840_100 Hb_132840_100 Hb_001638_300--Hb_132840_100 Hb_000365_330 Hb_000365_330 Hb_001638_300--Hb_000365_330 Hb_004129_070 Hb_004129_070 Hb_001638_300--Hb_004129_070 Hb_032920_130 Hb_032920_130 Hb_001638_300--Hb_032920_130 Hb_147505_010 Hb_147505_010 Hb_001638_300--Hb_147505_010 Hb_001033_050 Hb_001033_050 Hb_001638_300--Hb_001033_050 Hb_132840_100--Hb_032920_130 Hb_000035_410 Hb_000035_410 Hb_132840_100--Hb_000035_410 Hb_002044_170 Hb_002044_170 Hb_132840_100--Hb_002044_170 Hb_000176_130 Hb_000176_130 Hb_132840_100--Hb_000176_130 Hb_132840_100--Hb_000365_330 Hb_000664_110 Hb_000664_110 Hb_000365_330--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_000365_330--Hb_005946_210 Hb_000352_070 Hb_000352_070 Hb_000365_330--Hb_000352_070 Hb_001109_060 Hb_001109_060 Hb_000365_330--Hb_001109_060 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_002044_170 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_003929_140 Hb_003929_140 Hb_147505_010--Hb_003929_140 Hb_004629_010 Hb_004629_010 Hb_147505_010--Hb_004629_010 Hb_000661_020 Hb_000661_020 Hb_147505_010--Hb_000661_020 Hb_000563_600 Hb_000563_600 Hb_147505_010--Hb_000563_600 Hb_000028_510 Hb_000028_510 Hb_147505_010--Hb_000028_510 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5575 32.7845 20.9212 29.0764 30.2974 25.3495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65445 6.37388 16.4329 15.0331 19.364

CAGE analysis