Hb_000365_330

Information

Type -
Description -
Location Contig365: 310479-314015
Sequence    

Annotation

kegg
ID rcu:RCOM_0126460
description zinc finger protein, putative
nr
ID XP_002531814.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9T0P5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0126460 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase praja-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37600: 310490-312144 , PASA_asmbl_37601: 312158-314024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_330 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001638_300 0.0783341147 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
3 Hb_000664_110 0.0823152984 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
4 Hb_005946_210 0.0864897762 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
5 Hb_000352_070 0.0893423238 - - Potassium transporter, putative [Ricinus communis]
6 Hb_132840_100 0.0923856964 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
7 Hb_001109_060 0.0935239182 - - amino acid transporter, putative [Ricinus communis]
8 Hb_134362_010 0.0938411355 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
9 Hb_002044_170 0.0947593463 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
10 Hb_001277_300 0.094872334 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
11 Hb_010272_010 0.0951052495 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
12 Hb_000284_230 0.0956154723 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
13 Hb_162275_040 0.0962154202 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004701_050 0.1000372625 - - alpha1 family protein [Populus trichocarpa]
15 Hb_002027_280 0.1003948905 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
16 Hb_004429_010 0.1004494061 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_009252_050 0.1015622399 - - protein binding protein, putative [Ricinus communis]
18 Hb_000261_100 0.1015776359 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
19 Hb_133702_020 0.1020637018 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003124_160 0.1020775486 - - dynamin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_330 Hb_000365_330 Hb_001638_300 Hb_001638_300 Hb_000365_330--Hb_001638_300 Hb_000664_110 Hb_000664_110 Hb_000365_330--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_000365_330--Hb_005946_210 Hb_000352_070 Hb_000352_070 Hb_000365_330--Hb_000352_070 Hb_132840_100 Hb_132840_100 Hb_000365_330--Hb_132840_100 Hb_001109_060 Hb_001109_060 Hb_000365_330--Hb_001109_060 Hb_001638_300--Hb_132840_100 Hb_004129_070 Hb_004129_070 Hb_001638_300--Hb_004129_070 Hb_032920_130 Hb_032920_130 Hb_001638_300--Hb_032920_130 Hb_147505_010 Hb_147505_010 Hb_001638_300--Hb_147505_010 Hb_001033_050 Hb_001033_050 Hb_001638_300--Hb_001033_050 Hb_010272_010 Hb_010272_010 Hb_000664_110--Hb_010272_010 Hb_012215_010 Hb_012215_010 Hb_000664_110--Hb_012215_010 Hb_000664_110--Hb_005946_210 Hb_000640_070 Hb_000640_070 Hb_000664_110--Hb_000640_070 Hb_000664_110--Hb_001109_060 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170 Hb_005946_210--Hb_010272_010 Hb_005946_210--Hb_001109_060 Hb_008226_090 Hb_008226_090 Hb_005946_210--Hb_008226_090 Hb_005946_210--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_005946_210--Hb_002539_110 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_134362_010 Hb_134362_010 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_004429_010 Hb_004429_010 Hb_000352_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030 Hb_132840_100--Hb_032920_130 Hb_000035_410 Hb_000035_410 Hb_132840_100--Hb_000035_410 Hb_002044_170 Hb_002044_170 Hb_132840_100--Hb_002044_170 Hb_000176_130 Hb_000176_130 Hb_132840_100--Hb_000176_130 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4382 18.5876 9.75229 20.4132 19.6876 13.1898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2943 4.89498 6.71318 8.78969 15.2212

CAGE analysis