Hb_005227_010

Information

Type -
Description -
Location Contig5227: 21529-30280
Sequence    

Annotation

kegg
ID rcu:RCOM_0702360
description transferase, transferring glycosyl groups, putative
nr
ID XP_012071425.1
description PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03972 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transferring glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46857: 21447-28263 , PASA_asmbl_46858: 27617-27817 , PASA_asmbl_46859: 28329-30019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005227_010 0.0 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
2 Hb_001109_060 0.053102275 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000086_440 0.0676815266 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
4 Hb_000008_270 0.068780836 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
5 Hb_017295_010 0.0694247345 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
6 Hb_002539_110 0.0708364585 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
7 Hb_162275_040 0.072328226 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012215_010 0.0756233192 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
9 Hb_005946_210 0.0777788132 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
10 Hb_000107_210 0.0810098625 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
11 Hb_010272_010 0.0836229141 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
12 Hb_008511_020 0.0863103666 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
13 Hb_000579_240 0.0888406275 - - phosphatidylinositol transporter, putative [Ricinus communis]
14 Hb_000664_110 0.0901953442 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
15 Hb_132840_110 0.0903742252 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
16 Hb_001789_030 0.0908477062 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
17 Hb_002785_050 0.0912740767 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
18 Hb_000960_040 0.0939857045 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
19 Hb_000004_030 0.0950682726 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
20 Hb_000780_190 0.0950936003 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005227_010 Hb_005227_010 Hb_001109_060 Hb_001109_060 Hb_005227_010--Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_005227_010--Hb_000086_440 Hb_000008_270 Hb_000008_270 Hb_005227_010--Hb_000008_270 Hb_017295_010 Hb_017295_010 Hb_005227_010--Hb_017295_010 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_162275_040 Hb_162275_040 Hb_005227_010--Hb_162275_040 Hb_001109_060--Hb_000086_440 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_000008_270--Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_000008_270--Hb_000107_210 Hb_000008_270--Hb_001109_060 Hb_009851_050 Hb_009851_050 Hb_000008_270--Hb_009851_050 Hb_009529_030 Hb_009529_030 Hb_000008_270--Hb_009529_030 Hb_017295_010--Hb_000107_210 Hb_017295_010--Hb_009529_030 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_162275_040--Hb_010272_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.36889 4.42013 5.1789 9.0604 7.34096 7.20967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60258 3.06277 4.08557 4.49866 8.31611

CAGE analysis