Hb_132840_110

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig132840: 68288-71602
Sequence    

Annotation

kegg
ID rcu:RCOM_1339660
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_002515074.1
description pyruvate dehydrogenase, putative [Ricinus communis]
swissprot
ID O24457
description Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=2 SV=1
trembl
ID B9RNK3
description Pyruvate dehydrogenase E1 component subunit alpha OS=Ricinus communis GN=RCOM_1339660 PE=4 SV=1
Gene Ontology
ID GO:0043231
description pyruvate dehydrogenase e1 component subunit alpha- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09362: 68204-68330 , PASA_asmbl_09363: 68352-71302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_110 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
2 Hb_000214_050 0.0645649057 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
3 Hb_001789_190 0.067770742 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
4 Hb_000340_420 0.0689004163 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
5 Hb_000086_440 0.0718747226 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
6 Hb_001014_100 0.0749963172 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
7 Hb_002811_270 0.0753258444 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
8 Hb_000346_060 0.0760839106 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
9 Hb_004097_070 0.0770646988 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
10 Hb_025557_050 0.0776963189 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
11 Hb_006658_020 0.0786142279 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
12 Hb_017151_010 0.0789002262 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
13 Hb_000679_270 0.0820060413 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_001268_280 0.0823101991 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000362_170 0.0827045434 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
16 Hb_000136_110 0.0827278968 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
17 Hb_012215_010 0.0837553925 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
18 Hb_000665_120 0.0837588198 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
19 Hb_001518_080 0.0847952049 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
20 Hb_000107_210 0.0853636713 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_110 Hb_132840_110 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_004097_070 Hb_004097_070 Hb_001789_190--Hb_004097_070 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_003531_080 Hb_003531_080 Hb_000340_420--Hb_003531_080 Hb_007007_120 Hb_007007_120 Hb_000340_420--Hb_007007_120 Hb_000340_420--Hb_001789_190 Hb_007290_030 Hb_007290_030 Hb_000340_420--Hb_007290_030 Hb_000340_420--Hb_000214_050 Hb_001109_060 Hb_001109_060 Hb_000086_440--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000086_440--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_005496_050 Hb_005496_050 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_001014_100--Hb_002811_270 Hb_002811_270--Hb_002326_040 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_002811_270--Hb_000373_080 Hb_002811_270--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2259 13.8537 17.7867 19.185 15.051 16.5109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1321 8.14474 11.5473 10.3341 22.0516

CAGE analysis