Hb_000261_050

Information

Type -
Description -
Location Contig261: 30805-35839
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32610g
description permease-related family protein
nr
ID XP_011045609.1
description PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
swissprot
ID B3LFA3
description Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 SV=1
trembl
ID U5GRZ1
description Permease-related family protein OS=Populus trichocarpa GN=POPTR_0001s32610g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27231: 30819-31308 , PASA_asmbl_27232: 31336-33535 , PASA_asmbl_27233: 32740-32873 , PASA_asmbl_27234: 35174-35580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_050 0.0 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
2 Hb_001014_100 0.0697395136 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
3 Hb_032202_220 0.0869953666 - - ring finger protein, putative [Ricinus communis]
4 Hb_000193_330 0.0917432892 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
5 Hb_005496_050 0.0917771553 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
6 Hb_001876_040 0.0941165472 - - PREDICTED: mucin-5B [Jatropha curcas]
7 Hb_002027_080 0.0962569886 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
8 Hb_000836_290 0.097069507 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_013405_080 0.0973269004 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
10 Hb_000099_160 0.0999966621 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
11 Hb_001157_230 0.1037095339 - - Protein AFR, putative [Ricinus communis]
12 Hb_005250_010 0.1044957676 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
13 Hb_002232_390 0.1046394581 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
14 Hb_001512_040 0.10472363 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_000445_090 0.1057965353 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_002150_140 0.1061184988 - - PREDICTED: girdin-like [Jatropha curcas]
17 Hb_000046_540 0.106266623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
18 Hb_001660_120 0.1065266058 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
19 Hb_000212_230 0.1070709127 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
20 Hb_004631_150 0.1090092422 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000261_050 Hb_000261_050 Hb_001014_100 Hb_001014_100 Hb_000261_050--Hb_001014_100 Hb_032202_220 Hb_032202_220 Hb_000261_050--Hb_032202_220 Hb_000193_330 Hb_000193_330 Hb_000261_050--Hb_000193_330 Hb_005496_050 Hb_005496_050 Hb_000261_050--Hb_005496_050 Hb_001876_040 Hb_001876_040 Hb_000261_050--Hb_001876_040 Hb_002027_080 Hb_002027_080 Hb_000261_050--Hb_002027_080 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_001014_100--Hb_005496_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_032202_220--Hb_000078_140 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_005496_050--Hb_000445_140 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_001876_040--Hb_002027_080 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58334 2.56781 4.0503 3.88064 3.32507 2.07452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.283 1.56376 2.87198 1.91156 6.97633

CAGE analysis