Hb_006816_180

Information

Type -
Description -
Location Contig6816: 127623-128380
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53801: 128515-128957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_180 0.0 - - -
2 Hb_005496_050 0.0717761726 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
3 Hb_000062_260 0.0897314038 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
4 Hb_000358_140 0.0969086843 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002027_090 0.0970859458 - - -
6 Hb_025557_050 0.0981145575 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
7 Hb_000300_670 0.1000898246 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
8 Hb_001619_050 0.1025422143 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
9 Hb_001660_120 0.1027697743 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
10 Hb_001005_130 0.1048275869 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_001014_100 0.1057292913 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
12 Hb_000627_250 0.1059023384 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
13 Hb_017151_010 0.1078092214 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
14 Hb_000640_160 0.1089036553 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
15 Hb_000445_140 0.1089657359 - - hypothetical protein RCOM_0561550 [Ricinus communis]
16 Hb_004398_030 0.1097507983 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
17 Hb_000331_130 0.1102840721 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
18 Hb_002150_140 0.1118463118 - - PREDICTED: girdin-like [Jatropha curcas]
19 Hb_010812_050 0.1120632067 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
20 Hb_003225_020 0.1126396423 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_180 Hb_006816_180 Hb_005496_050 Hb_005496_050 Hb_006816_180--Hb_005496_050 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_025557_050 Hb_025557_050 Hb_006816_180--Hb_025557_050 Hb_000300_670 Hb_000300_670 Hb_006816_180--Hb_000300_670 Hb_001014_100 Hb_001014_100 Hb_005496_050--Hb_001014_100 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_000445_140 Hb_000445_140 Hb_005496_050--Hb_000445_140 Hb_001619_050 Hb_001619_050 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_002639_140 Hb_002639_140 Hb_000062_260--Hb_002639_140 Hb_001700_010 Hb_001700_010 Hb_000062_260--Hb_001700_010 Hb_002217_260 Hb_002217_260 Hb_000062_260--Hb_002217_260 Hb_009775_010 Hb_009775_010 Hb_000062_260--Hb_009775_010 Hb_004398_030 Hb_004398_030 Hb_000062_260--Hb_004398_030 Hb_000358_140--Hb_002027_090 Hb_005883_020 Hb_005883_020 Hb_000358_140--Hb_005883_020 Hb_010812_050 Hb_010812_050 Hb_000358_140--Hb_010812_050 Hb_000358_140--Hb_041327_020 Hb_002233_130 Hb_002233_130 Hb_000358_140--Hb_002233_130 Hb_002027_090--Hb_010812_050 Hb_002027_090--Hb_005496_050 Hb_002027_090--Hb_041327_020 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_000300_670--Hb_025557_050 Hb_000640_160 Hb_000640_160 Hb_000300_670--Hb_000640_160 Hb_003029_070 Hb_003029_070 Hb_000300_670--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000300_670--Hb_004970_190 Hb_007803_030 Hb_007803_030 Hb_000300_670--Hb_007803_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.20456 3.54536 4.56187 2.11746 2.50105 2.8122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16247 2.08585 2.4385 1.26591 6.74701

CAGE analysis