Hb_000358_140

Information

Type -
Description -
Location Contig358: 169745-172988
Sequence    

Annotation

kegg
ID rcu:RCOM_2121360
description hypothetical protein
nr
ID XP_002535109.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SL79
description CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=2 SV=2
trembl
ID B9TA40
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2121360 PE=4 SV=1
Gene Ontology
ID GO:0003723
description crs2-associated factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36893: 170012-172819 , PASA_asmbl_36894: 173884-174222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002027_090 0.0699665875 - - -
3 Hb_005883_020 0.0930846952 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
4 Hb_010812_050 0.0959554436 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
5 Hb_006816_180 0.0969086843 - - -
6 Hb_041327_020 0.1081487722 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002233_130 0.1113421126 - - transporter, putative [Ricinus communis]
8 Hb_003900_030 0.1116589189 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
9 Hb_000331_560 0.1141225312 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
10 Hb_001259_020 0.1142258811 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
11 Hb_000849_020 0.1149713403 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
12 Hb_001916_100 0.1157222187 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
13 Hb_008206_060 0.1159535212 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_025557_050 0.116996136 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
15 Hb_005496_050 0.1177744488 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
16 Hb_001662_140 0.1186468548 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
17 Hb_002328_040 0.1189445556 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
18 Hb_000331_130 0.1201756893 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
19 Hb_000205_260 0.1219884147 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
20 Hb_000627_250 0.122161905 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_140 Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_000358_140--Hb_002027_090 Hb_005883_020 Hb_005883_020 Hb_000358_140--Hb_005883_020 Hb_010812_050 Hb_010812_050 Hb_000358_140--Hb_010812_050 Hb_006816_180 Hb_006816_180 Hb_000358_140--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_000358_140--Hb_041327_020 Hb_002233_130 Hb_002233_130 Hb_000358_140--Hb_002233_130 Hb_002027_090--Hb_010812_050 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_002027_090--Hb_041327_020 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_003900_030 Hb_003900_030 Hb_005883_020--Hb_003900_030 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_007192_090 Hb_007192_090 Hb_005883_020--Hb_007192_090 Hb_004254_100 Hb_004254_100 Hb_005883_020--Hb_004254_100 Hb_005883_020--Hb_002233_130 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_006816_180--Hb_005496_050 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_006816_180--Hb_025557_050 Hb_000300_670 Hb_000300_670 Hb_006816_180--Hb_000300_670 Hb_041327_020--Hb_005496_050 Hb_098209_010 Hb_098209_010 Hb_041327_020--Hb_098209_010 Hb_132840_110 Hb_132840_110 Hb_041327_020--Hb_132840_110 Hb_001619_050 Hb_001619_050 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_000445_140 Hb_000445_140 Hb_041327_020--Hb_000445_140 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7094 17.1428 13.8564 6.63521 14.1431 13.1822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54022 6.04654 5.91184 5.03724 26.5542

CAGE analysis