Hb_010812_050

Information

Type -
Description -
Location Contig10812: 32463-39329
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08950g
description hypothetical protein
nr
ID XP_012091120.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
swissprot
ID Q9ASX5
description Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=2 SV=1
trembl
ID A0A067JNQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03301 PE=4 SV=1
Gene Ontology
ID GO:0016301
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02489: 32248-32425 , PASA_asmbl_02490: 32467-39273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_050 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
2 Hb_000856_420 0.0659206738 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_025557_050 0.0696091871 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
4 Hb_007479_070 0.0715265921 - - peroxisomal membrane protein [Hevea brasiliensis]
5 Hb_000849_020 0.0797983979 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
6 Hb_001789_190 0.0917087837 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
7 Hb_002027_090 0.0938068148 - - -
8 Hb_008059_010 0.0945290434 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
9 Hb_001021_220 0.095137572 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
10 Hb_000015_100 0.0953019707 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_008206_060 0.0956795165 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000358_140 0.0959554436 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000346_060 0.0966021124 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
14 Hb_003884_030 0.0966383075 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
15 Hb_001619_050 0.0968085343 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
16 Hb_017151_010 0.0985826676 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
17 Hb_000834_200 0.0989520272 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
18 Hb_004097_070 0.099779725 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
19 Hb_001377_110 0.1001851523 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
20 Hb_000205_260 0.1011269552 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]

Gene co-expression network

sample Hb_010812_050 Hb_010812_050 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_008695_110 Hb_008695_110 Hb_000856_420--Hb_008695_110 Hb_008059_010 Hb_008059_010 Hb_000856_420--Hb_008059_010 Hb_000834_200 Hb_000834_200 Hb_000856_420--Hb_000834_200 Hb_022256_060 Hb_022256_060 Hb_000856_420--Hb_022256_060 Hb_000343_250 Hb_000343_250 Hb_000856_420--Hb_000343_250 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_025557_050--Hb_001789_190 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_007479_070--Hb_000856_420 Hb_007479_070--Hb_025557_050 Hb_001123_260 Hb_001123_260 Hb_007479_070--Hb_001123_260 Hb_002686_240 Hb_002686_240 Hb_007479_070--Hb_002686_240 Hb_007479_070--Hb_008059_010 Hb_000107_400 Hb_000107_400 Hb_000849_020--Hb_000107_400 Hb_003884_030 Hb_003884_030 Hb_000849_020--Hb_003884_030 Hb_002749_110 Hb_002749_110 Hb_000849_020--Hb_002749_110 Hb_001898_090 Hb_001898_090 Hb_000849_020--Hb_001898_090 Hb_001021_220 Hb_001021_220 Hb_000849_020--Hb_001021_220 Hb_001789_190--Hb_004097_070 Hb_132840_110 Hb_132840_110 Hb_001789_190--Hb_132840_110 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001789_190--Hb_001021_220 Hb_000358_140 Hb_000358_140 Hb_002027_090--Hb_000358_140 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_041327_020 Hb_041327_020 Hb_002027_090--Hb_041327_020 Hb_006816_180 Hb_006816_180 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2498 23.6671 26.4633 15.0352 27.2384 28.5219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8887 10.0563 12.3316 9.78543 35.2987

CAGE analysis