Hb_003884_030

Information

Type -
Description -
Location Contig3884: 40053-53936
Sequence    

Annotation

kegg
ID rcu:RCOM_1316790
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_002518995.1
description GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
swissprot
ID Q9C516
description Extra-large guanine nucleotide-binding protein 3 OS=Arabidopsis thaliana GN=XLG3 PE=1 SV=1
trembl
ID B9RZ26
description GTP-binding protein alpha subunit, gna, putative OS=Ricinus communis GN=RCOM_1316790 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38945: 40100-53689 , PASA_asmbl_38946: 53310-53603 , PASA_asmbl_38947: 43525-45036 , PASA_asmbl_38948: 42895-52413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003884_030 0.0 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
2 Hb_027380_140 0.0729229715 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
3 Hb_000035_410 0.0747547759 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
4 Hb_089140_050 0.0757074552 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
5 Hb_004108_100 0.0762652429 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
6 Hb_003656_180 0.0766677224 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
7 Hb_000429_220 0.0795195169 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
8 Hb_000960_100 0.0797169348 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
9 Hb_002081_010 0.0816922205 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008024_030 0.0817432892 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
11 Hb_000849_020 0.0832187581 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
12 Hb_004453_110 0.0838730576 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
13 Hb_011344_020 0.0844203306 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
14 Hb_000853_210 0.0849560196 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
15 Hb_007062_020 0.08645115 - - gcn4-complementing protein, putative [Ricinus communis]
16 Hb_000183_020 0.0881138036 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
17 Hb_006882_020 0.0881352221 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000935_090 0.0904244517 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
19 Hb_000785_040 0.0905165105 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
20 Hb_006816_430 0.0911999979 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003884_030 Hb_003884_030 Hb_027380_140 Hb_027380_140 Hb_003884_030--Hb_027380_140 Hb_000035_410 Hb_000035_410 Hb_003884_030--Hb_000035_410 Hb_089140_050 Hb_089140_050 Hb_003884_030--Hb_089140_050 Hb_004108_100 Hb_004108_100 Hb_003884_030--Hb_004108_100 Hb_003656_180 Hb_003656_180 Hb_003884_030--Hb_003656_180 Hb_000429_220 Hb_000429_220 Hb_003884_030--Hb_000429_220 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_000261_030 Hb_000261_030 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_089140_050--Hb_000429_220 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_089140_050--Hb_000035_410 Hb_000960_100 Hb_000960_100 Hb_004108_100--Hb_000960_100 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_000025_320 Hb_000025_320 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_117552_010 Hb_117552_010 Hb_003656_180--Hb_117552_010 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070 Hb_000429_220--Hb_004453_110 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.907 28.5645 17.3335 18.1334 32.9768 38.8773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8371 9.62946 18.015 15.6692 32.6903

CAGE analysis