Hb_102269_010

Information

Type -
Description -
Location Contig102269: 53-706
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28940g
description hypothetical protein
nr
ID XP_006382159.1
description hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N689
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102269_010 0.0 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
2 Hb_003656_180 0.070384576 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
3 Hb_001473_090 0.0854011335 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
4 Hb_001811_120 0.0859983945 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
5 Hb_000475_020 0.0894644314 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
6 Hb_003029_130 0.0897242844 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
7 Hb_000160_290 0.0899061155 - - unnamed protein product [Vitis vinifera]
8 Hb_000441_180 0.0901652237 - - Early endosome antigen, putative [Ricinus communis]
9 Hb_117552_010 0.0907868659 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000785_040 0.0913184103 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
11 Hb_030627_060 0.0918222538 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
12 Hb_058702_010 0.092350036 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
13 Hb_000209_070 0.0930574646 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
14 Hb_002551_070 0.0931636986 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
15 Hb_001417_050 0.0935721153 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
16 Hb_003044_020 0.0941393123 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_000158_100 0.0942068471 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000487_220 0.0944705207 - - eukaryotic translation elongation factor, putative [Ricinus communis]
19 Hb_000935_090 0.0957913105 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
20 Hb_005701_070 0.0959505174 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]

Gene co-expression network

sample Hb_102269_010 Hb_102269_010 Hb_003656_180 Hb_003656_180 Hb_102269_010--Hb_003656_180 Hb_001473_090 Hb_001473_090 Hb_102269_010--Hb_001473_090 Hb_001811_120 Hb_001811_120 Hb_102269_010--Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_102269_010--Hb_000475_020 Hb_003029_130 Hb_003029_130 Hb_102269_010--Hb_003029_130 Hb_000160_290 Hb_000160_290 Hb_102269_010--Hb_000160_290 Hb_117552_010 Hb_117552_010 Hb_003656_180--Hb_117552_010 Hb_003884_030 Hb_003884_030 Hb_003656_180--Hb_003884_030 Hb_000785_040 Hb_000785_040 Hb_003656_180--Hb_000785_040 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_001473_090--Hb_000785_040 Hb_001811_120--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_000250_070 Hb_000250_070 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_002291_070 Hb_002291_070 Hb_001811_120--Hb_002291_070 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.82968 7.02792 2.39051 5.39608 9.95012 14.3855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65098 2.16988 3.22085 5.05695 6.86053

CAGE analysis