Hb_002686_240

Information

Type -
Description -
Location Contig2686: 157495-159825
Sequence    

Annotation

kegg
ID rcu:RCOM_1122190
description Thioredoxin, putative
nr
ID XP_002525461.1
description Thioredoxin, putative [Ricinus communis]
swissprot
ID O64654
description Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1
trembl
ID B9SHJ2
description Thioredoxin, putative OS=Ricinus communis GN=RCOM_1122190 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like 1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28033: 157523-160001 , PASA_asmbl_28034: 158190-160001
cDNA
(Sanger)
(ID:Location)		 003_C02.ab1: 158665-159931 , 027_H19.ab1: 158695-159935 , 032_C08.ab1: 158680-159931 , 036_D10.ab1: 158175-159935 , 044_N02.ab1: 158678-159935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_240 0.0 - - Thioredoxin, putative [Ricinus communis]
2 Hb_000559_020 0.0831016383 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
3 Hb_007479_070 0.098325498 - - peroxisomal membrane protein [Hevea brasiliensis]
4 Hb_001348_190 0.0991256418 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
5 Hb_010812_050 0.1026871763 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
6 Hb_001662_140 0.1038797208 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
7 Hb_000205_260 0.1046149502 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
8 Hb_005288_070 0.1059951659 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_003747_120 0.1084659321 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
10 Hb_005523_020 0.1099176662 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
11 Hb_008059_010 0.1118596226 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
12 Hb_001005_130 0.1124351599 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_000856_420 0.1134683258 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_003225_020 0.1140888772 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
15 Hb_007283_010 0.11428258 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
16 Hb_027905_020 0.1143467429 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
17 Hb_000640_160 0.1153938973 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_006816_180 0.1172408235 - - -
19 Hb_005276_200 0.1179846748 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
20 Hb_001377_040 0.118688383 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_240 Hb_002686_240 Hb_000559_020 Hb_000559_020 Hb_002686_240--Hb_000559_020 Hb_007479_070 Hb_007479_070 Hb_002686_240--Hb_007479_070 Hb_001348_190 Hb_001348_190 Hb_002686_240--Hb_001348_190 Hb_010812_050 Hb_010812_050 Hb_002686_240--Hb_010812_050 Hb_001662_140 Hb_001662_140 Hb_002686_240--Hb_001662_140 Hb_000205_260 Hb_000205_260 Hb_002686_240--Hb_000205_260 Hb_000559_020--Hb_001348_190 Hb_001377_040 Hb_001377_040 Hb_000559_020--Hb_001377_040 Hb_001005_130 Hb_001005_130 Hb_000559_020--Hb_001005_130 Hb_000538_280 Hb_000538_280 Hb_000559_020--Hb_000538_280 Hb_027905_020 Hb_027905_020 Hb_000559_020--Hb_027905_020 Hb_007479_070--Hb_010812_050 Hb_000856_420 Hb_000856_420 Hb_007479_070--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_007479_070--Hb_025557_050 Hb_001123_260 Hb_001123_260 Hb_007479_070--Hb_001123_260 Hb_008059_010 Hb_008059_010 Hb_007479_070--Hb_008059_010 Hb_000703_290 Hb_000703_290 Hb_001348_190--Hb_000703_290 Hb_004096_240 Hb_004096_240 Hb_001348_190--Hb_004096_240 Hb_003752_070 Hb_003752_070 Hb_001348_190--Hb_003752_070 Hb_000640_160 Hb_000640_160 Hb_001348_190--Hb_000640_160 Hb_010812_050--Hb_000856_420 Hb_010812_050--Hb_025557_050 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_000331_130 Hb_000331_130 Hb_001662_140--Hb_000331_130 Hb_001660_120 Hb_001660_120 Hb_001662_140--Hb_001660_120 Hb_031284_010 Hb_031284_010 Hb_001662_140--Hb_031284_010 Hb_003038_200 Hb_003038_200 Hb_001662_140--Hb_003038_200 Hb_002233_130 Hb_002233_130 Hb_001662_140--Hb_002233_130 Hb_001662_140--Hb_008059_010 Hb_005523_020 Hb_005523_020 Hb_000205_260--Hb_005523_020 Hb_007044_110 Hb_007044_110 Hb_000205_260--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_000205_260--Hb_008059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.6412 208.981 208.24 103.635 126.098 164.423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.458 95.0597 64.9915 57.694 266.502

CAGE analysis