Hb_000559_020

Information

Type -
Description -
Location Contig559: 36421-43108
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10800g
description POPTRDRAFT_845640; hypothetical protein
nr
ID XP_012086695.1
description PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
swissprot
ID Q93YV9
description F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1
trembl
ID A0A067JMT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48655: 36876-39062 , PASA_asmbl_48656: 36844-39020 , PASA_asmbl_48657: 36797-39062 , PASA_asmbl_48659: 39778-42753
cDNA
(Sanger)
(ID:Location)		 040_G01.ab1: 36863-39062 , 041_E06.ab1: 37201-38936 , 046_C24.ab1: 36893-39016

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000559_020 0.0 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
2 Hb_002686_240 0.0831016383 - - Thioredoxin, putative [Ricinus communis]
3 Hb_001348_190 0.08489961 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
4 Hb_001377_040 0.0994171909 - - chitinase, putative [Ricinus communis]
5 Hb_001005_130 0.1004672037 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
6 Hb_000538_280 0.1059598647 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
7 Hb_027905_020 0.1102860002 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
8 Hb_001635_210 0.1121511634 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
9 Hb_003125_220 0.1125898265 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
10 Hb_000193_330 0.1144233134 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
11 Hb_001776_020 0.1151983326 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
12 Hb_013405_080 0.1152870419 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
13 Hb_000665_120 0.1154623525 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
14 Hb_000169_020 0.1155552006 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
15 Hb_002205_030 0.1157039059 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
16 Hb_008642_060 0.1181527108 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_000155_170 0.1181705903 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
18 Hb_001421_090 0.1195475884 - - hypothetical protein RCOM_1278080 [Ricinus communis]
19 Hb_004003_040 0.1196930295 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000340_040 0.1199945689 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000559_020 Hb_000559_020 Hb_002686_240 Hb_002686_240 Hb_000559_020--Hb_002686_240 Hb_001348_190 Hb_001348_190 Hb_000559_020--Hb_001348_190 Hb_001377_040 Hb_001377_040 Hb_000559_020--Hb_001377_040 Hb_001005_130 Hb_001005_130 Hb_000559_020--Hb_001005_130 Hb_000538_280 Hb_000538_280 Hb_000559_020--Hb_000538_280 Hb_027905_020 Hb_027905_020 Hb_000559_020--Hb_027905_020 Hb_007479_070 Hb_007479_070 Hb_002686_240--Hb_007479_070 Hb_002686_240--Hb_001348_190 Hb_010812_050 Hb_010812_050 Hb_002686_240--Hb_010812_050 Hb_001662_140 Hb_001662_140 Hb_002686_240--Hb_001662_140 Hb_000205_260 Hb_000205_260 Hb_002686_240--Hb_000205_260 Hb_000703_290 Hb_000703_290 Hb_001348_190--Hb_000703_290 Hb_004096_240 Hb_004096_240 Hb_001348_190--Hb_004096_240 Hb_003752_070 Hb_003752_070 Hb_001348_190--Hb_003752_070 Hb_000640_160 Hb_000640_160 Hb_001348_190--Hb_000640_160 Hb_000802_130 Hb_000802_130 Hb_001377_040--Hb_000802_130 Hb_001472_160 Hb_001472_160 Hb_001377_040--Hb_001472_160 Hb_001660_120 Hb_001660_120 Hb_001377_040--Hb_001660_120 Hb_000331_130 Hb_000331_130 Hb_001377_040--Hb_000331_130 Hb_002411_190 Hb_002411_190 Hb_001377_040--Hb_002411_190 Hb_000193_330 Hb_000193_330 Hb_001005_130--Hb_000193_330 Hb_001005_130--Hb_000538_280 Hb_006816_370 Hb_006816_370 Hb_001005_130--Hb_006816_370 Hb_000665_120 Hb_000665_120 Hb_001005_130--Hb_000665_120 Hb_000007_010 Hb_000007_010 Hb_001005_130--Hb_000007_010 Hb_001377_190 Hb_001377_190 Hb_001005_130--Hb_001377_190 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_002413_010 Hb_002413_010 Hb_027905_020--Hb_002413_010 Hb_017214_040 Hb_017214_040 Hb_027905_020--Hb_017214_040 Hb_001951_200 Hb_001951_200 Hb_027905_020--Hb_001951_200 Hb_027905_020--Hb_004096_240 Hb_008387_010 Hb_008387_010 Hb_027905_020--Hb_008387_010 Hb_000120_210 Hb_000120_210 Hb_027905_020--Hb_000120_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.69529 11.3194 11.7146 8.43841 5.47242 8.84041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84798 4.08797 4.11805 4.77753 16.5122

CAGE analysis