Hb_001377_040

Information

Type -
Description -
Location Contig1377: 32699-43672
Sequence    

Annotation

kegg
ID rcu:RCOM_0719550
description chitinase, putative
nr
ID XP_002523373.1
description chitinase, putative [Ricinus communis]
swissprot
ID Q9M158
description Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
trembl
ID B9SBK4
description Chitinase, putative OS=Ricinus communis GN=RCOM_0719550 PE=3 SV=1
Gene Ontology
ID GO:0004568
description rhodanese-like domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10358: 32729-37510 , PASA_asmbl_10361: 39234-42087 , PASA_asmbl_10362: 39234-42087 , PASA_asmbl_10364: 42216-42357 , PASA_asmbl_10365: 42458-42638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_040 0.0 - - chitinase, putative [Ricinus communis]
2 Hb_000802_130 0.0955933873 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
3 Hb_001472_160 0.0970914862 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_001660_120 0.0971913168 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
5 Hb_000559_020 0.0994171909 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
6 Hb_000331_130 0.1019638323 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
7 Hb_002411_190 0.1038001937 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_168893_030 0.104584979 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
9 Hb_002600_070 0.1047620393 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
10 Hb_000613_120 0.1058400221 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
11 Hb_000363_060 0.1063739143 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_004108_060 0.1067052189 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
13 Hb_001828_120 0.1070393291 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
14 Hb_010174_090 0.1081097264 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
15 Hb_004884_180 0.1087615821 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
16 Hb_013405_080 0.1096948842 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
17 Hb_000144_060 0.1100800887 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_011861_050 0.1110681977 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
19 Hb_001014_100 0.1111803642 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
20 Hb_002675_250 0.1114906588 - - aspartate aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001377_040 Hb_001377_040 Hb_000802_130 Hb_000802_130 Hb_001377_040--Hb_000802_130 Hb_001472_160 Hb_001472_160 Hb_001377_040--Hb_001472_160 Hb_001660_120 Hb_001660_120 Hb_001377_040--Hb_001660_120 Hb_000559_020 Hb_000559_020 Hb_001377_040--Hb_000559_020 Hb_000331_130 Hb_000331_130 Hb_001377_040--Hb_000331_130 Hb_002411_190 Hb_002411_190 Hb_001377_040--Hb_002411_190 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_002686_240 Hb_002686_240 Hb_000559_020--Hb_002686_240 Hb_001348_190 Hb_001348_190 Hb_000559_020--Hb_001348_190 Hb_001005_130 Hb_001005_130 Hb_000559_020--Hb_001005_130 Hb_000538_280 Hb_000538_280 Hb_000559_020--Hb_000538_280 Hb_027905_020 Hb_027905_020 Hb_000559_020--Hb_027905_020 Hb_000331_130--Hb_001662_140 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_000331_130--Hb_004884_180 Hb_000331_130--Hb_000363_060 Hb_002233_130 Hb_002233_130 Hb_000331_130--Hb_002233_130 Hb_001635_210 Hb_001635_210 Hb_002411_190--Hb_001635_210 Hb_007012_030 Hb_007012_030 Hb_002411_190--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_002411_190--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_002411_190--Hb_009158_060 Hb_168893_030 Hb_168893_030 Hb_002411_190--Hb_168893_030 Hb_000748_090 Hb_000748_090 Hb_002411_190--Hb_000748_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0199 37.8059 65.0861 23.856 24.5896 28.2132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7581 12.6759 22.9244 21.5626 81.1359

CAGE analysis